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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rnl:A (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    2 7rnl:A (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    3 7rnl:A (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    4 7rnl:A (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    5 7rnl:B (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    6 7rnl:B (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    7 7rnl:B (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    8 7rnl:B (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    9 7rnl:C (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    10 7rnl:C (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    11 7rnl:C (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    12 7rnl:C (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    13 7rnl:D (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    14 7rnl:D (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    15 7rnl:D (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    16 7rnl:D (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    17 7rnl:E (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    18 7rnl:E (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    19 7rnl:E (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    20 7rnl:E (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    21 7rnl:F (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    22 7rnl:F (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    23 7rnl:F (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    24 7rnl:F (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    25 7rnl:G (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    26 7rnl:G (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    27 7rnl:G (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    28 7rnl:G (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    29 7rnl:H (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    30 7rnl:H (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    31 7rnl:H (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    32 7rnl:H (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    33 7rnl:I (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    34 7rnl:I (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    35 7rnl:I (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    36 7rnl:I (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    37 7rnl:J (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    38 7rnl:J (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    39 7rnl:J (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    40 7rnl:J (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    41 7rnl:K (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    42 7rnl:K (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    43 7rnl:K (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    44 7rnl:K (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    45 7rnl:L (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    46 7rnl:L (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    47 7rnl:L (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    48 7rnl:L (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    49 7rnl:M (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    50 7rnl:M (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    51 7rnl:M (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    52 7rnl:M (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    53 7rnl:N (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    54 7rnl:N (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    55 7rnl:N (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    56 7rnl:N (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    57 7rnl:O (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    58 7rnl:O (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    59 7rnl:O (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    60 7rnl:O (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    61 7rnl:P (3.7) BS01 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    62 7rnl:P (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    63 7rnl:P (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    64 7rnl:P (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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