Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 102 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7r81:B2 (2.7) BS01 rna ? GO:0000028 ... Q01291 34815343
    2 7r81:C2 (2.7) BS01 rna ? GO:0003735 ... Q871N9 34815343
    3 7r81:D1 (2.7) BS01 rna ? GO:0002181 ... Q7RVQ9 34815343
    4 7r81:D2 (2.7) BS01 rna ? GO:0000054 ... Q7S503 34815343
    5 7r81:D2 (2.7) BS02 rna ? GO:0000054 ... Q7S503 34815343
    6 7r81:E1 (2.7) BS01 rna ? GO:0003723 ... P59671 34815343
    7 7r81:E2 (2.7) BS01 rna ? GO:0000054 ... Q7RV52 34815343
    8 7r81:E2 (2.7) BS02 rna ? GO:0000054 ... Q7RV52 34815343
    9 7r81:F1 (2.7) BS01 rna ? GO:0003723 ... Q1K7B7 34815343
    10 7r81:F1 (2.7) BS02 rna ? GO:0003723 ... Q1K7B7 34815343
    11 7r81:F2 (2.7) BS01 rna ? GO:0003723 ... Q7SE03 34815343
    12 7r81:F2 (2.7) BS02 MG ? GO:0003723 ... Q7SE03 34815343
    13 7r81:G1 (2.7) BS01 rna ? GO:0000027 ... O59953 34815343
    14 7r81:G1 (2.7) BS02 rna ? GO:0000027 ... O59953 34815343
    15 7r81:G2 (2.7) BS01 rna ? GO:0000028 ... Q7RVI1 34815343
    16 7r81:H1 (2.7) BS01 rna ? GO:0000027 ... Q7SH22 34815343
    17 7r81:H2 (2.7) BS01 rna ? GO:0003735 ... V5INQ2 34815343
    18 7r81:I1 (2.7) BS01 rna ? GO:0000463 ... Q7SBD5 34815343
    19 7r81:I1 (2.7) BS02 rna ? GO:0000463 ... Q7SBD5 34815343
    20 7r81:I2 (2.7) BS01 rna ? GO:0003735 ... O43105 34815343
    21 7r81:J1 (2.7) BS01 rna ? GO:0000470 ... Q6MFL6 34815343
    22 7r81:J1 (2.7) BS02 rna ? GO:0000470 ... Q6MFL6 34815343
    23 7r81:J2 (2.7) BS01 rna ? GO:0000462 ... V5IPM8 34815343
    24 7r81:J2 (2.7) BS02 rna ? GO:0000462 ... V5IPM8 34815343
    25 7r81:K1 (2.7) BS01 rna ? GO:0002181 ... Q7SGA6 34815343
    26 7r81:K2 (2.7) BS01 rna ? GO:0003723 ... Q7SDY7 34815343
    27 7r81:L1 (2.7) BS01 rna ? GO:0000027 ... Q7S7F0 34815343
    28 7r81:L1 (2.7) BS02 rna ? GO:0000027 ... Q7S7F0 34815343
    29 7r81:L1 (2.7) BS03 rna ? GO:0000027 ... Q7S7F0 34815343
    30 7r81:L2 (2.7) BS01 rna ? GO:0003723 ... Q873A6 34815343
    31 7r81:M1 (2.7) BS01 rna ? GO:0003723 ... Q7RVN0 34815343
    32 7r81:M1 (2.7) BS02 rna ? GO:0003723 ... Q7RVN0 34815343
    33 7r81:M1 (2.7) BS03 rna ? GO:0003723 ... Q7RVN0 34815343
    34 7r81:M2 (2.7) BS01 rna ? GO:0003735 ... Q7SFZ2 34815343
    35 7r81:N1 (2.7) BS01 rna ? GO:0003723 ... Q7S709 34815343
    36 7r81:N1 (2.7) BS02 rna ? GO:0003723 ... Q7S709 34815343
    37 7r81:N2 (2.7) BS01 rna ? GO:0000028 ... Q7RV74 34815343
    38 7r81:O1 (2.7) BS01 rna ? GO:0003723 ... Q7SI18 34815343
    39 7r81:O2 (2.7) BS01 rna ? GO:0000462 ... Q7SDH0 34815343
    40 7r81:O2 (2.7) BS02 rna ? GO:0000462 ... Q7SDH0 34815343
    41 7r81:P1 (2.7) BS01 rna ? GO:0002181 ... Q8X034 34815343
    42 7r81:P1 (2.7) BS02 rna ? GO:0002181 ... Q8X034 34815343
    43 7r81:P2 (2.7) BS01 rna N/A GO:0003735 ... N/A 34815343
    44 7r81:Q1 (2.7) BS01 rna ? GO:0003735 ... V5ILK7 34815343
    45 7r81:Q2 (2.7) BS01 rna ? GO:0000028 ... Q7SGF1 34815343
    46 7r81:Q2 (2.7) BS02 rna ? GO:0000028 ... Q7SGF1 34815343
    47 7r81:Q2 (2.7) BS03 rna ? GO:0000028 ... Q7SGF1 34815343
    48 7r81:R1 (2.7) BS01 rna ? GO:0002181 ... Q9HE25 34815343
    49 7r81:R1 (2.7) BS02 rna ? GO:0002181 ... Q9HE25 34815343
    50 7r81:R2 (2.7) BS01 rna ? GO:0000462 ... Q7SFJ9 34815343
    51 7r81:S1 (2.7) BS01 rna ? GO:0003723 ... Q7RXJ4 34815343
    52 7r81:S2 (2.7) BS01 rna ? GO:0003735 ... P27770 34815343
    53 7r81:T1 (2.7) BS01 rna ? GO:0003723 ... Q7S5N9 34815343
    54 7r81:T1 (2.7) BS02 rna ? GO:0003723 ... Q7S5N9 34815343
    55 7r81:T2 (2.7) BS01 rna ? GO:0003676 ... Q7RXX0 34815343
    56 7r81:U1 (2.7) BS01 rna ? GO:0003735 ... V5IQT8 34815343
    57 7r81:U1 (2.7) BS02 rna ? GO:0003735 ... V5IQT8 34815343
    58 7r81:U2 (2.7) BS01 rna ? GO:0000028 ... Q7SBD8 34815343
    59 7r81:V1 (2.7) BS01 rna ? GO:0003735 ... Q7SDY8 34815343
    60 7r81:V1 (2.7) BS02 rna ? GO:0003735 ... Q7SDY8 34815343
    61 7r81:V2 (2.7) BS01 rna ? GO:0000462 ... Q7S3G1 34815343
    62 7r81:W1 (2.7) BS01 rna ? GO:0002181 ... Q1K6Z3 34815343
    63 7r81:X1 (2.7) BS01 rna ? GO:0003735 ... Q7SHJ9 34815343
    64 7r81:X1 (2.7) BS02 rna ? GO:0003735 ... Q7SHJ9 34815343
    65 7r81:X2 (2.7) BS01 rna ? GO:0003735 ... Q7RV75 34815343
    66 7r81:Y1 (2.7) BS01 rna ? GO:0002181 ... Q7SDU2 34815343
    67 7r81:Y2 (2.7) BS01 rna ? GO:0003735 ... Q9HE74 34815343
    68 7r81:Y2 (2.7) BS02 rna ? GO:0003735 ... Q9HE74 34815343
    69 7r81:Z1 (2.7) BS01 rna ? GO:0000027 ... Q7SBS9 34815343
    70 7r81:Z1 (2.7) BS02 rna ? GO:0000027 ... Q7SBS9 34815343
    71 7r81:Z2 (2.7) BS01 rna ? GO:0003735 ... Q1K5V9 34815343
    72 7r81:a1 (2.7) BS01 rna ? GO:0002181 ... Q1K4V7 34815343
    73 7r81:a1 (2.7) BS02 rna ? GO:0002181 ... Q1K4V7 34815343
    74 7r81:a2 (2.7) BS01 rna ? GO:0003735 ... Q7SC06 34815343
    75 7r81:b1 (2.7) BS01 rna ? GO:0003735 ... Q1K580 34815343
    76 7r81:b2 (2.7) BS01 rna ? GO:0003729 ... P21772 34815343
    77 7r81:c1 (2.7) BS01 rna ? GO:0003723 ... P08978 34815343
    78 7r81:c2 (2.7) BS01 rna ? GO:0000028 ... Q7RVN2 34815343
    79 7r81:d1 (2.7) BS01 rna ? GO:0002181 ... Q7RZP9 34815343
    80 7r81:d2 (2.7) BS01 rna ? GO:0000028 ... Q7S6W5 34815343
    81 7r81:e1 (2.7) BS01 rna ? GO:0003723 ... Q7S7F1 34815343
    82 7r81:e2 (2.7) BS01 rna ? GO:0002181 ... Q9C2P2 34815343
    83 7r81:f1 (2.7) BS01 rna ? GO:0002181 ... Q7RW15 34815343
    84 7r81:f2 (2.7) BS01 rna ? GO:0003735 ... V5IMG5 34815343
    85 7r81:g1 (2.7) BS01 rna ? GO:0003735 ... Q7RXY1 34815343
    86 7r81:g2 (2.7) BS01 rna ? GO:0003735 ... P14799 34815343
    87 7r81:h1 (2.7) BS01 rna ? GO:0002181 ... Q7S156 34815343
    88 7r81:h2 (2.7) BS01 rna ? GO:0001965 ... Q01369 34815343
    89 7r81:i1 (2.7) BS01 rna ? GO:0003735 ... Q7RVY8 34815343
    90 7r81:j1 (2.7) BS01 rna ? GO:0000463 ... A7UW39 34815343
    91 7r81:j1 (2.7) BS02 rna ? GO:0000463 ... A7UW39 34815343
    92 7r81:k1 (2.7) BS01 rna ? GO:0002181 ... Q7SEP1 34815343
    93 7r81:l1 (2.7) BS01 rna ? GO:0003723 ... V5IQ48 34815343
    94 7r81:l1 (2.7) BS02 rna ? GO:0003723 ... V5IQ48 34815343
    95 7r81:m1 (2.7) BS01 rna ? GO:0003735 ... Q9C2B9 34815343
    96 7r81:n1 (2.7) BS01 rna ? GO:0003735 ... Q7S2X9 34815343
    97 7r81:n1 (2.7) BS02 rna ? GO:0003735 ... Q7S2X9 34815343
    98 7r81:o1 (2.7) BS01 rna ? GO:0003735 ... V5INI1 34815343
    99 7r81:q1 (2.7) BS01 rna ? GO:0003735 ... Q7RVK8 34815343
    100 7r81:q1 (2.7) BS02 rna ? GO:0003735 ... Q7RVK8 34815343
    101 7r81:r1 (2.7) BS01 rna ? GO:0003735 ... Q7S1Z1 34815343
    102 7r81:s1 (2.7) BS01 rna ? GO:0003735 ... Q7SBB3 34815343
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218