Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qtt:C (3.1) BS01 rna ? GO:0000245 ... O75533 37165190
    2 7qtt:C (3.1) BS02 rna ? GO:0000245 ... O75533 37165190
    3 7qtt:D (3.1) BS01 rna ? GO:0000398 ... Q7RTV0 37165190
    4 7qtt:D (3.1) BS02 ZN ? GO:0000398 ... Q7RTV0 37165190
    5 7qtt:D (3.1) BS03 ZN ? GO:0000398 ... Q7RTV0 37165190
    6 7qtt:E (3.1) BS01 rna ? GO:0000398 ... Q13435 37165190
    7 7qtt:E (3.1) BS02 rna ? GO:0000398 ... Q13435 37165190
    8 7qtt:E (3.1) BS03 rna ? GO:0000398 ... Q13435 37165190
    9 7qtt:I (3.1) BS01 rna ? GO:0000245 ... Q15428 37165190
    10 7qtt:I (3.1) BS02 rna ? GO:0000245 ... Q15428 37165190
    11 7qtt:I (3.1) BS03 rna ? GO:0000245 ... Q15428 37165190
    12 7qtt:I (3.1) BS04 rna ? GO:0000245 ... Q15428 37165190
    13 7qtt:I (3.1) BS05 ZN ? GO:0000245 ... Q15428 37165190
    14 7qtt:J (3.1) BS01 rna ? GO:0000375 ... Q12874 37165190
    15 7qtt:J (3.1) BS02 rna ? GO:0000375 ... Q12874 37165190
    16 7qtt:J (3.1) BS03 ZN ? GO:0000375 ... Q12874 37165190
    17 7qtt:N (3.1) BS01 rna 3.6.4.13 GO:0000398 ... O60231 37165190
    18 7qtt:P (3.1) BS01 rna ? GO:0000077 ... Q99459 37165190
    19 7qtt:P (3.1) BS02 rna ? GO:0000077 ... Q99459 37165190
    20 7qtt:Q (3.1) BS01 rna ? GO:0000398 ... Q9P013 37165190
    21 7qtt:Q (3.1) BS02 rna ? GO:0000398 ... Q9P013 37165190
    22 7qtt:T (3.1) BS01 rna ? GO:0000398 ... P41223 37165190
    23 7qtt:T (3.1) BS02 ZN ? GO:0000398 ... P41223 37165190
    24 7qtt:T (3.1) BS03 ZN ? GO:0000398 ... P41223 37165190
    25 7qtt:T (3.1) BS04 ZN ? GO:0000398 ... P41223 37165190
    26 7qtt:U (3.1) BS01 rna ? GO:0000398 ... Q9NW64 37165190
    27 7qtt:U (3.1) BS02 rna ? GO:0000398 ... Q9NW64 37165190
    28 7qtt:U (3.1) BS03 ZN ? GO:0000398 ... Q9NW64 37165190
    29 7qtt:U (3.1) BS04 ZN ? GO:0000398 ... Q9NW64 37165190
    30 7qtt:U (3.1) BS05 ZN ? GO:0000398 ... Q9NW64 37165190
    31 7qtt:V (3.1) BS01 rna 5.2.1.8 GO:0000413 ... Q8WUA2 37165190
    32 7qtt:W (3.1) BS01 peptide ? GO:0000398 ... Q9HCG8 37165190
    33 7qtt:X (3.1) BS01 rna ? GO:0000245 ... Q9BZJ0 37165190
    34 7qtt:Y (3.1) BS01 rna ? GO:0000122 ... Q13573 37165190
    35 7qtt:Y (3.1) BS02 rna ? GO:0000122 ... Q13573 37165190
    36 7qtt:Z (3.1) BS01 rna 2.3.2.27 GO:0000398 ... O15541 37165190
    37 7qtt:Z (3.1) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 37165190
    38 7qtt:a (3.1) BS01 rna ? GO:0000244 ... Q6P2Q9 37165190
    39 7qtt:a (3.1) BS02 rna ? GO:0000244 ... Q6P2Q9 37165190
    40 7qtt:a (3.1) BS03 rna ? GO:0000244 ... Q6P2Q9 37165190
    41 7qtt:a (3.1) BS04 rna ? GO:0000244 ... Q6P2Q9 37165190
    42 7qtt:a (3.1) BS05 IHP ? GO:0000244 ... Q6P2Q9 37165190
    43 7qtt:b (3.1) BS01 rna ? GO:0000398 ... Q15029 37165190
    44 7qtt:b (3.1) BS02 GTP ? GO:0000398 ... Q15029 37165190
    45 7qtt:h (3.1) BS01 rna ? GO:0000387 ... P62306 37165190
    46 7qtt:i (3.1) BS01 rna ? GO:0000245 ... P62304 37165190
    47 7qtt:j (3.1) BS01 rna ? GO:0000243 ... P62318 37165190
    48 7qtt:k (3.1) BS01 rna ? GO:0000243 ... P62314 37165190
    49 7qtt:l (3.1) BS01 rna ? GO:0000245 ... P62316 37165190
    50 7qtt:m (3.1) BS01 rna ? GO:0000245 ... P62308 37165190
    51 7qtt:n (3.1) BS01 rna ? GO:0000387 ... P14678 37165190
    52 7qtt:q (3.1) BS01 rna ? GO:0000398 ... Q9UQ35 37165190
    53 7qtt:q (3.1) BS02 rna ? GO:0000398 ... Q9UQ35 37165190
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218