Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qgr:1 (5.7) BS01 rna ? GO:0000028 ... P0A7V0 35264790
    2 7qgr:2 (5.7) BS01 rna ? GO:0000028 ... P0A7V3 35264790
    3 7qgr:2 (5.7) BS02 rna ? GO:0000028 ... P0A7V3 35264790
    4 7qgr:3 (5.7) BS01 rna ? GO:0003723 ... P0A7V8 35264790
    5 7qgr:4 (5.7) BS01 rna ? GO:0003723 ... P0A7W1 35264790
    6 7qgr:5 (5.7) BS01 rna ? GO:0002181 ... P02358 35264790
    7 7qgr:6 (5.7) BS01 rna ? GO:0003723 ... P02359 35264790
    8 7qgr:7 (5.7) BS01 rna ? GO:0000028 ... P0A7W7 35264790
    9 7qgr:8 (5.7) BS01 rna N/A GO:0003735 ... P0A7X3 35264790
    10 7qgr:8 (5.7) BS02 rna N/A GO:0003735 ... P0A7X3 35264790
    11 7qgr:9 (5.7) BS01 rna ? GO:0000049 ... P0A7R5 35264790
    12 7qgr:A (5.7) BS01 rna N/A GO:0003735 ... P0A7R9 35264790
    13 7qgr:B (5.7) BS01 rna ? GO:0000028 ... P0A7S3 35264790
    14 7qgr:C (5.7) BS01 rna N/A GO:0003723 ... P0A7L0 35264790
    15 7qgr:D (5.7) BS01 rna ? GO:0000049 ... P0A7S9 35264790
    16 7qgr:E (5.7) BS01 rna ? GO:0003735 ... P0AG59 35264790
    17 7qgr:F (5.7) BS01 rna ? GO:0000028 ... P0ADZ4 35264790
    18 7qgr:F (5.7) BS02 rna ? GO:0000028 ... P0ADZ4 35264790
    19 7qgr:G (5.7) BS01 rna ? GO:0000028 ... P0A7T3 35264790
    20 7qgr:H (5.7) BS01 rna N/A GO:0003735 ... P0AG63 35264790
    21 7qgr:I (5.7) BS01 rna N/A GO:0003735 ... N/A 35264790
    22 7qgr:J (5.7) BS01 rna N/A GO:0003723 ... P0A7U3 35264790
    23 7qgr:K (5.7) BS01 rna ? GO:0000028 ... P0A7U7 35264790
    24 7qgr:L (5.7) BS01 rna ? GO:0003735 ... P0A7M9 35264790
    25 7qgr:P (5.7) BS01 rna ? GO:0000027 ... P60422 35264790
    26 7qgr:Q (5.7) BS01 rna N/A GO:0003735 ... P60438 35264790
    27 7qgr:R (5.7) BS01 rna ? GO:0001070 ... P60723 35264790
    28 7qgr:S (5.7) BS01 rna ? GO:0000027 ... P62399 35264790
    29 7qgr:S (5.7) BS02 rna ? GO:0000027 ... P62399 35264790
    30 7qgr:S (5.7) BS03 rna ? GO:0000027 ... P62399 35264790
    31 7qgr:T (5.7) BS01 rna ? GO:0000027 ... P0AG55 35264790
    32 7qgr:U (5.7) BS01 rna ? GO:0002181 ... P0A7R1 35264790
    33 7qgr:V (5.7) BS01 rna ? GO:0000027 ... P0A7J7 35264790
    34 7qgr:W (5.7) BS01 rna ? GO:0002181 ... P0AA10 35264790
    35 7qgr:X (5.7) BS01 rna ? GO:0002181 ... P0ADY3 35264790
    36 7qgr:X (5.7) BS02 rna ? GO:0002181 ... P0ADY3 35264790
    37 7qgr:Y (5.7) BS01 rna ? GO:0002181 ... P02413 35264790
    38 7qgr:Z (5.7) BS01 rna ? GO:0000027 ... P0ADY7 35264790
    39 7qgr:Z (5.7) BS02 rna ? GO:0000027 ... P0ADY7 35264790
    40 7qgr:a (5.7) BS01 rna N/A GO:0003735 ... P0AG44 35264790
    41 7qgr:b (5.7) BS01 rna ? GO:0002181 ... P0C018 35264790
    42 7qgr:b (5.7) BS02 rna ? GO:0002181 ... P0C018 35264790
    43 7qgr:c (5.7) BS01 rna ? GO:0000027 ... P0A7K6 35264790
    44 7qgr:c (5.7) BS02 rna ? GO:0000027 ... P0A7K6 35264790
    45 7qgr:d (5.7) BS01 rna ? GO:0000027 ... P0A7L3 35264790
    46 7qgr:e (5.7) BS01 rna ? GO:0002181 ... P0AG48 35264790
    47 7qgr:f (5.7) BS01 rna ? GO:0002181 ... P61175 35264790
    48 7qgr:g (5.7) BS01 rna N/A GO:0003735 ... P0ADZ0 35264790
    49 7qgr:h (5.7) BS01 rna ? GO:0000027 ... P60624 35264790
    50 7qgr:i (5.7) BS01 rna ? GO:0000027 ... P68919 35264790
    51 7qgr:j (5.7) BS01 rna N/A GO:0003735 ... P0A7L8 35264790
    52 7qgr:j (5.7) BS02 rna N/A GO:0003735 ... P0A7L8 35264790
    53 7qgr:k (5.7) BS01 rna ? GO:0000027 ... P0A7M2 35264790
    54 7qgr:l (5.7) BS01 rna ? GO:0000027 ... P0A7M6 35264790
    55 7qgr:m (5.7) BS01 rna ? GO:0000027 ... P0AG51 35264790
    56 7qgr:m (5.7) BS02 rna ? GO:0000027 ... P0AG51 35264790
    57 7qgr:n (5.7) BS01 rna ? GO:0000027 ... P0A7N4 35264790
    58 7qgr:o (5.7) BS01 rna ? GO:0000027 ... P0A7N9 35264790
    59 7qgr:p (5.7) BS01 rna ? GO:0002181 ... P0A7P5 35264790
    60 7qgr:q (5.7) BS01 rna ? GO:0002181 ... P0A7Q1 35264790
    61 7qgr:r (5.7) BS01 rna N/A GO:0003735 ... P0A7Q6 35264790
    62 7qgr:s (5.7) BS01 rna ? GO:0000028 ... P68679 35264790
    63 7qgr:v (5.7) BS01 rna ? GO:0004519 ... P0A8B2 35264790
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218