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BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pmz:A (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    2 7pmz:A (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    3 7pmz:A (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    4 7pmz:B (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    5 7pmz:B (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    6 7pmz:B (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    7 7pmz:C (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    8 7pmz:C (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    9 7pmz:D (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    10 7pmz:D (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    11 7pmz:D (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    12 7pmz:E (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    13 7pmz:E (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    14 7pmz:E (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    15 7pmz:F (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    16 7pmz:F (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    17 7pmz:F (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    18 7pmz:G (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    19 7pmz:G (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    20 7pmz:G (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    21 7pmz:H (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    22 7pmz:H (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    23 7pmz:H (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    24 7pmz:I (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    25 7pmz:I (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    26 7pmz:J (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    27 7pmz:J (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    28 7pmz:K (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    29 7pmz:K (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    30 7pmz:K (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    31 7pmz:L (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    32 7pmz:L (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    33 7pmz:M (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    34 7pmz:M (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    35 7pmz:N (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    36 7pmz:N (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    37 7pmz:N (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    38 7pmz:O (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    39 7pmz:O (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    40 7pmz:P (2.03) BS01 ATP 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    41 7pmz:P (2.03) BS02 G4P 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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