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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pks:A (3.6) BS01 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34762484
    2 7pks:A (3.6) BS02 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34762484
    3 7pks:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34762484
    4 7pks:A (3.6) BS04 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34762484
    5 7pks:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34762484
    6 7pks:A (3.6) BS06 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34762484
    7 7pks:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... A0A0B8RVL1 34762484
    8 7pks:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... A0A0B8RVL1 34762484
    9 7pks:B (3.6) BS03 dna 2.7.7.6 GO:0000428 ... A0A0B8RVL1 34762484
    10 7pks:B (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... A0A0B8RVL1 34762484
    11 7pks:C (3.6) BS01 ZN ? GO:0003677 ... A0A481DF93 34762484
    12 7pks:E (3.6) BS01 dna ? GO:0001054 ... I3LSI7 34762484
    13 7pks:I (3.6) BS01 ZN ? GO:0000428 ... P60899 34762484
    14 7pks:I (3.6) BS02 ZN ? GO:0000428 ... P60899 34762484
    15 7pks:J (3.6) BS01 ZN ? GO:0000428 ... A0A7K6NXI9 34762484
    16 7pks:L (3.6) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 34762484
    17 7pks:b (3.6) BS01 peptide ? GO:0005515 ... Q9H0H0 34762484
    18 7pks:g (3.6) BS01 peptide ? GO:0000077 ... Q9NVH2 34762484
    19 7pks:g (3.6) BS02 peptide ? GO:0000077 ... Q9NVH2 34762484
    20 7pks:k (3.6) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 34762484
    21 7pks:k (3.6) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 34762484
    22 7pks:q (3.6) BS01 MN 3.1.3.16 GO:0000159 ... P67775 34762484
    23 7pks:q (3.6) BS02 MN 3.1.3.16 GO:0000159 ... P67775 34762484
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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