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BioLiP
Download all results in tab-seperated text for 58 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ph9:0 (8.7) BS01 rna ? GO:0003735 ... P78006 36171285
    2 7ph9:1 (8.7) BS01 rna ? GO:0003735 ... P75447 36171285
    3 7ph9:2 (8.7) BS01 rna ? GO:0003735 ... P52864 36171285
    4 7ph9:A (8.7) BS01 rna ? GO:0003735 ... P75560 36171285
    5 7ph9:B (8.7) BS01 rna ? GO:0003676 ... P41205 36171285
    6 7ph9:C (8.7) BS01 rna ? GO:0003723 ... P46775 36171285
    7 7ph9:D (8.7) BS01 rna ? GO:0003723 ... Q50301 36171285
    8 7ph9:E (8.7) BS01 rna ? GO:0003735 ... P75543 36171285
    9 7ph9:F (8.7) BS01 rna ? GO:0000028 ... P75545 36171285
    10 7ph9:G (8.7) BS01 rna ? GO:0003735 ... Q50304 36171285
    11 7ph9:H (8.7) BS01 rna ? GO:0003723 ... P75179 36171285
    12 7ph9:I (8.7) BS01 rna ? GO:0000049 ... P75581 36171285
    13 7ph9:J (8.7) BS01 rna ? GO:0003735 ... Q50296 36171285
    14 7ph9:K (8.7) BS01 rna ? GO:0000049 ... P75546 36171285
    15 7ph9:L (8.7) BS01 rna ? GO:0000049 ... Q50297 36171285
    16 7ph9:L (8.7) BS02 rna ? GO:0000049 ... Q50297 36171285
    17 7ph9:M (8.7) BS01 rna ? GO:0003735 ... Q50305 36171285
    18 7ph9:N (8.7) BS01 rna ? GO:0003735 ... P75173 36171285
    19 7ph9:N (8.7) BS02 rna ? GO:0003735 ... P75173 36171285
    20 7ph9:O (8.7) BS01 rna ? GO:0003735 ... P75131 36171285
    21 7ph9:P (8.7) BS01 rna ? GO:0003735 ... Q50309 36171285
    22 7ph9:Q (8.7) BS01 rna ? GO:0003735 ... P75541 36171285
    23 7ph9:R (8.7) BS01 rna ? GO:0000028 ... P75576 36171285
    24 7ph9:S (8.7) BS01 rna ? GO:0003723 ... P75237 36171285
    25 7ph9:T (8.7) BS01 rna ? GO:0003735 ... P57079 36171285
    26 7ph9:a (8.7) BS01 rna ? GO:0002181 ... P75577 36171285
    27 7ph9:b (8.7) BS01 rna ? GO:0003735 ... P75580 36171285
    28 7ph9:c (8.7) BS01 rna ? GO:0003735 ... P75579 36171285
    29 7ph9:d (8.7) BS01 rna ? GO:0000049 ... Q50306 36171285
    30 7ph9:d (8.7) BS02 rna ? GO:0000049 ... Q50306 36171285
    31 7ph9:d (8.7) BS03 rna ? GO:0000049 ... Q50306 36171285
    32 7ph9:e (8.7) BS01 rna ? GO:0003735 ... Q50303 36171285
    33 7ph9:f (8.7) BS01 rna ? GO:0003735 ... P75540 36171285
    34 7ph9:g (8.7) BS01 rna ? GO:0003735 ... P75240 36171285
    35 7ph9:h (8.7) BS01 rna ? GO:0003735 ... P75550 36171285
    36 7ph9:i (8.7) BS01 rna ? GO:0003729 ... P75178 36171285
    37 7ph9:j (8.7) BS01 rna ? GO:0003735 ... Q50308 36171285
    38 7ph9:j (8.7) BS02 rna ? GO:0003735 ... Q50308 36171285
    39 7ph9:k (8.7) BS01 rna ? GO:0003735 ... Q50300 36171285
    40 7ph9:l (8.7) BS01 rna ? GO:0000049 ... P41204 36171285
    41 7ph9:l (8.7) BS02 rna ? GO:0000049 ... P41204 36171285
    42 7ph9:m (8.7) BS01 rna ? GO:0003735 ... Q59547 36171285
    43 7ph9:n (8.7) BS01 rna ? GO:0003735 ... Q50302 36171285
    44 7ph9:n (8.7) BS02 rna ? GO:0003735 ... Q50302 36171285
    45 7ph9:o (8.7) BS01 rna ? GO:0003735 ... P75133 36171285
    46 7ph9:o (8.7) BS02 rna ? GO:0003735 ... P75133 36171285
    47 7ph9:p (8.7) BS01 rna ? GO:0000027 ... P78023 36171285
    48 7ph9:q (8.7) BS01 rna ? GO:0003723 ... P78026 36171285
    49 7ph9:r (8.7) BS01 rna ? GO:0003735 ... P75575 36171285
    50 7ph9:s (8.7) BS01 rna ? GO:0003735 ... P75578 36171285
    51 7ph9:t (8.7) BS01 rna ? GO:0003723 ... Q50307 36171285
    52 7ph9:u (8.7) BS01 rna ? GO:0003735 ... P75458 36171285
    53 7ph9:u (8.7) BS02 rna ? GO:0003735 ... P75458 36171285
    54 7ph9:u (8.7) BS03 rna ? GO:0003735 ... P75458 36171285
    55 7ph9:v (8.7) BS01 rna ? GO:0003735 ... P75171 36171285
    56 7ph9:w (8.7) BS01 rna ? GO:0003735 ... Q50310 36171285
    57 7ph9:y (8.7) BS01 rna ? GO:0003735 ... P75238 36171285
    58 7ph9:z (8.7) BS01 rna ? GO:0003735 ... P78015 36171285
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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