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BioLiP Library
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ohs:3 (4.38) BS01 rna ? GO:0000460 ... P10962 34813592
    2 7ohs:4 (4.38) BS01 rna ? GO:0003674 ... P35178 34813592
    3 7ohs:5 (4.38) BS01 rna ? GO:0003674 ... P53136 34813592
    4 7ohs:A (4.38) BS01 rna ? GO:0000027 ... Q08235 34813592
    5 7ohs:B (4.38) BS01 rna ? GO:0000027 ... P14126 34813592
    6 7ohs:C (4.38) BS01 rna ? GO:0002181 ... P10664 34813592
    7 7ohs:C (4.38) BS02 rna ? GO:0002181 ... P10664 34813592
    8 7ohs:D (4.38) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 34813592
    9 7ohs:E (4.38) BS01 rna ? GO:0000027 ... Q02326 34813592
    10 7ohs:F (4.38) BS01 rna ? GO:0000463 ... P05737 34813592
    11 7ohs:G (4.38) BS01 rna ? GO:0000470 ... P17076 34813592
    12 7ohs:G (4.38) BS02 rna ? GO:0000470 ... P17076 34813592
    13 7ohs:G (4.38) BS03 rna ? GO:0000470 ... P17076 34813592
    14 7ohs:H (4.38) BS01 rna ? GO:0002181 ... P05738 34813592
    15 7ohs:K (4.38) BS01 rna ? GO:0000462 ... P38779 34813592
    16 7ohs:L (4.38) BS01 rna ? GO:0002181 ... Q12690 34813592
    17 7ohs:L (4.38) BS02 rna ? GO:0002181 ... Q12690 34813592
    18 7ohs:M (4.38) BS01 rna ? GO:0000027 ... P36105 34813592
    19 7ohs:N (4.38) BS01 rna ? GO:0002181 ... P05748 34813592
    20 7ohs:N (4.38) BS02 rna ? GO:0002181 ... P05748 34813592
    21 7ohs:O (4.38) BS01 rna ? GO:0000470 ... P26784 34813592
    22 7ohs:P (4.38) BS01 rna ? GO:0000448 ... P05740 34813592
    23 7ohs:P (4.38) BS02 rna ? GO:0000448 ... P05740 34813592
    24 7ohs:Q (4.38) BS01 rna ? GO:0002181 ... P0CX49 34813592
    25 7ohs:S (4.38) BS01 rna ? GO:0002181 ... P0CX23 34813592
    26 7ohs:V (4.38) BS01 rna ? GO:0002181 ... P0CX41 34813592
    27 7ohs:W (4.38) BS01 rna ? GO:0000027 ... P33201 34813592
    28 7ohs:Y (4.38) BS01 rna ? GO:0002181 ... P05743 34813592
    29 7ohs:Y (4.38) BS02 rna ? GO:0002181 ... P05743 34813592
    30 7ohs:b (4.38) BS01 rna ? GO:0000054 ... Q02892 34813592
    31 7ohs:e (4.38) BS01 rna ? GO:0002181 ... P38061 34813592
    32 7ohs:f (4.38) BS01 rna ? GO:0000027 ... P05744 34813592
    33 7ohs:h (4.38) BS01 rna ? GO:0000463 ... P0CX84 34813592
    34 7ohs:h (4.38) BS02 rna ? GO:0000463 ... P0CX84 34813592
    35 7ohs:i (4.38) BS01 rna ? GO:0002181 ... P05745 34813592
    36 7ohs:j (4.38) BS01 rna ? GO:0000448 ... P49166 34813592
    37 7ohs:j (4.38) BS02 rna ? GO:0000448 ... P49166 34813592
    38 7ohs:j (4.38) BS03 ZN ? GO:0000448 ... P49166 34813592
    39 7ohs:m (4.38) BS01 rna ? GO:0000463 ... Q04660 34813592
    40 7ohs:n (4.38) BS01 rna ? GO:0000462 ... P53261 34813592
    41 7ohs:n (4.38) BS02 rna ? GO:0000462 ... P53261 34813592
    42 7ohs:o (4.38) BS01 rna ? GO:0000463 ... P53927 34813592
    43 7ohs:r (4.38) BS01 rna ? GO:0000460 ... P40078 34813592
    44 7ohs:t (4.38) BS01 rna ? GO:0000463 ... P40693 34813592
    45 7ohs:t (4.38) BS02 rna ? GO:0000463 ... P40693 34813592
    46 7ohs:u (4.38) BS01 rna ? GO:0001671 ... Q07915 34813592
    47 7ohs:u (4.38) BS02 ZN ? GO:0001671 ... Q07915 34813592
    48 7ohs:v (4.38) BS01 rna ? GO:0003674 ... P40007 34813592
    49 7ohs:v (4.38) BS02 rna ? GO:0003674 ... P40007 34813592
    50 7ohs:x (4.38) BS01 rna ? GO:0000055 ... P38805 34813592
    51 7ohs:y (4.38) BS01 rna ? GO:0000054 ... Q12522 34813592
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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