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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7mdi:A (4.3) BS01 CDP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    2 7mdi:A (4.3) BS02 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    3 7mdi:A (4.3) BS03 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    4 7mdi:B (4.3) BS01 CDP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    5 7mdi:B (4.3) BS02 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    6 7mdi:B (4.3) BS03 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    7 7mdi:C (4.3) BS01 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    8 7mdi:C (4.3) BS02 CDP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    9 7mdi:C (4.3) BS03 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    10 7mdi:C (4.3) BS04 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    11 7mdi:D (4.3) BS01 CDP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    12 7mdi:D (4.3) BS02 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    13 7mdi:D (4.3) BS03 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    14 7mdi:D (4.3) BS04 DTP 1.17.4.1 GO:0004748 ... Q5F8Z6 34906669
    15 7mdi:E (4.3) BS01 FEO 1.17.4.1 GO:0004748 ... Q5F8Z5 34906669
    16 7mdi:F (4.3) BS01 FEO 1.17.4.1 GO:0004748 ... Q5F8Z5 34906669
    17 7mdi:G (4.3) BS01 FEO 1.17.4.1 GO:0004748 ... Q5F8Z5 34906669
    18 7mdi:H (4.3) BS01 FEO 1.17.4.1 GO:0004748 ... Q5F8Z5 34906669
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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