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BioLiP
Download all results in tab-seperated text for 88 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7m2t:A (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    2 7m2t:A (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    3 7m2t:A (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    4 7m2t:B (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    5 7m2t:BB (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    6 7m2t:BB (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    7 7m2t:BB (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    8 7m2t:C (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    9 7m2t:C (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    10 7m2t:CC (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    11 7m2t:D (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    12 7m2t:D (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    13 7m2t:D (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    14 7m2t:D (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    15 7m2t:DD (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    16 7m2t:DD (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    17 7m2t:E (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    18 7m2t:E (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    19 7m2t:E (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    20 7m2t:E (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    21 7m2t:EE (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    22 7m2t:EE (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    23 7m2t:EE (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    24 7m2t:EE (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    25 7m2t:F (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    26 7m2t:F (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    27 7m2t:F (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    28 7m2t:F (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    29 7m2t:F (2.71) BS05 rna ? GO:0005198 ... P17574 34866603
    30 7m2t:FF (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    31 7m2t:FF (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    32 7m2t:FF (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    33 7m2t:G (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    34 7m2t:G (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    35 7m2t:G (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    36 7m2t:G (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    37 7m2t:G (2.71) BS05 PO4 ? GO:0005198 ... P17574 34866603
    38 7m2t:GG (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    39 7m2t:GG (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    40 7m2t:GG (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    41 7m2t:GG (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    42 7m2t:H (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    43 7m2t:H (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    44 7m2t:H (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    45 7m2t:H (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    46 7m2t:HH (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    47 7m2t:HH (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    48 7m2t:HH (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    49 7m2t:I (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    50 7m2t:I (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    51 7m2t:II (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    52 7m2t:II (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    53 7m2t:II (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    54 7m2t:II (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    55 7m2t:II (2.71) BS05 rna ? GO:0005198 ... P17574 34866603
    56 7m2t:J (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    57 7m2t:J (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    58 7m2t:J (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    59 7m2t:J (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    60 7m2t:JJ (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    61 7m2t:JJ (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    62 7m2t:JJ (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    63 7m2t:K (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    64 7m2t:K (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    65 7m2t:K (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    66 7m2t:K (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    67 7m2t:K (2.71) BS05 rna ? GO:0005198 ... P17574 34866603
    68 7m2t:KK (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    69 7m2t:KK (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    70 7m2t:KK (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    71 7m2t:L (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    72 7m2t:LL (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    73 7m2t:LL (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    74 7m2t:LL (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    75 7m2t:M (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    76 7m2t:MM (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    77 7m2t:N (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    78 7m2t:N (2.71) BS02 PO4 ? GO:0005198 ... P17574 34866603
    79 7m2t:NN (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    80 7m2t:O (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    81 7m2t:O (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    82 7m2t:O (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    83 7m2t:O (2.71) BS04 rna ? GO:0005198 ... P17574 34866603
    84 7m2t:OO (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    85 7m2t:OO (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    86 7m2t:PP (2.71) BS01 rna ? GO:0005198 ... P17574 34866603
    87 7m2t:PP (2.71) BS02 rna ? GO:0005198 ... P17574 34866603
    88 7m2t:PP (2.71) BS03 rna ? GO:0005198 ... P17574 34866603
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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