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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7k55:8 (3.3) BS01 rna N/A GO:0003746 ... N/A 34330903
    2 7k55:8 (3.3) BS02 rna N/A GO:0003746 ... N/A 34330903
    3 7k55:8 (3.3) BS03 rna N/A GO:0003746 ... N/A 34330903
    4 7k55:8 (3.3) BS04 rna N/A GO:0003746 ... N/A 34330903
    5 7k55:8 (3.3) BS05 MG N/A GO:0003746 ... N/A 34330903
    6 7k55:A (3.3) BS01 rna ? GO:0002181 ... P0A7M9 34330903
    7 7k55:A (3.3) BS02 rna ? GO:0002181 ... P0A7M9 34330903
    8 7k55:B (3.3) BS01 rna ? GO:0000027 ... P0A7N4 34330903
    9 7k55:C (3.3) BS01 rna ? GO:0000027 ... P0A7N9 34330903
    10 7k55:D (3.3) BS01 rna ? GO:0002181 ... P0A7P5 34330903
    11 7k55:E (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 34330903
    12 7k55:F (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 34330903
    13 7k55:G (3.3) BS01 rna ? GO:0000028 ... P0A7V0 34330903
    14 7k55:H (3.3) BS01 rna ? GO:0003676 ... P0A7V3 34330903
    15 7k55:I (3.3) BS01 rna ? GO:0000028 ... P0A7V8 34330903
    16 7k55:J (3.3) BS01 rna ? GO:0000028 ... P0A7W1 34330903
    17 7k55:K (3.3) BS01 rna ? GO:0003735 ... P02358 34330903
    18 7k55:L (3.3) BS01 rna ? GO:0003723 ... P02359 34330903
    19 7k55:L (3.3) BS02 rna ? GO:0003723 ... P02359 34330903
    20 7k55:L (3.3) BS03 rna ? GO:0003723 ... P02359 34330903
    21 7k55:M (3.3) BS01 rna ? GO:0000028 ... P0A7W7 34330903
    22 7k55:N (3.3) BS01 rna ? GO:0000049 ... P0A7X3 34330903
    23 7k55:N (3.3) BS02 rna ? GO:0000049 ... P0A7X3 34330903
    24 7k55:O (3.3) BS01 rna ? GO:0000049 ... P0A7R5 34330903
    25 7k55:P (3.3) BS01 rna ? GO:0002181 ... P0A7R9 34330903
    26 7k55:Q (3.3) BS01 rna ? GO:0000049 ... P0A7S3 34330903
    27 7k55:R (3.3) BS01 rna ? GO:0000049 ... P0A7S9 34330903
    28 7k55:S (3.3) BS01 rna ? GO:0000028 ... P0AG59 34330903
    29 7k55:T (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 34330903
    30 7k55:T (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 34330903
    31 7k55:U (3.3) BS01 rna ? GO:0000028 ... P0A7T3 34330903
    32 7k55:V (3.3) BS01 rna ? GO:0000028 ... P0AG63 34330903
    33 7k55:W (3.3) BS01 rna ? GO:0003735 ... P0A7T7 34330903
    34 7k55:X (3.3) BS01 rna ? GO:0003723 ... P0A7U3 34330903
    35 7k55:Y (3.3) BS01 rna ? GO:0000028 ... P0A7U7 34330903
    36 7k55:Z (3.3) BS01 rna ? GO:0000028 ... P68679 34330903
    37 7k55:a (3.3) BS01 rna ? GO:0000027 ... P0A7L0 34330903
    38 7k55:b (3.3) BS01 rna ? GO:0000027 ... P60422 34330903
    39 7k55:c (3.3) BS01 rna ? GO:0000027 ... P60438 34330903
    40 7k55:d (3.3) BS01 rna ? GO:0001070 ... P60723 34330903
    41 7k55:e (3.3) BS01 rna ? GO:0000027 ... P62399 34330903
    42 7k55:e (3.3) BS02 rna ? GO:0000027 ... P62399 34330903
    43 7k55:e (3.3) BS03 rna ? GO:0000027 ... P62399 34330903
    44 7k55:f (3.3) BS01 rna ? GO:0000027 ... P0AG55 34330903
    45 7k55:g (3.3) BS01 rna ? GO:0002181 ... P0A7R1 34330903
    46 7k55:h (3.3) BS01 rna ? GO:0003735 ... P0A7J3 34330903
    47 7k55:i (3.3) BS01 rna ? GO:0000027 ... P0A7J7 34330903
    48 7k55:j (3.3) BS01 rna ? GO:0002181 ... P0AA10 34330903
    49 7k55:k (3.3) BS01 rna ? GO:0002181 ... P0ADY3 34330903
    50 7k55:k (3.3) BS02 rna ? GO:0002181 ... P0ADY3 34330903
    51 7k55:l (3.3) BS01 rna ? GO:0002181 ... P02413 34330903
    52 7k55:m (3.3) BS01 rna ? GO:0000027 ... P0ADY7 34330903
    53 7k55:m (3.3) BS02 rna ? GO:0000027 ... P0ADY7 34330903
    54 7k55:n (3.3) BS01 rna ? GO:0000027 ... P0AG44 34330903
    55 7k55:o (3.3) BS01 rna ? GO:0002181 ... P0C018 34330903
    56 7k55:o (3.3) BS02 rna ? GO:0002181 ... P0C018 34330903
    57 7k55:p (3.3) BS01 rna ? GO:0000027 ... P0A7K6 34330903
    58 7k55:p (3.3) BS02 rna ? GO:0000027 ... P0A7K6 34330903
    59 7k55:q (3.3) BS01 rna ? GO:0000027 ... P0A7L3 34330903
    60 7k55:r (3.3) BS01 rna ? GO:0002181 ... P0AG48 34330903
    61 7k55:s (3.3) BS01 rna ? GO:0002181 ... P61175 34330903
    62 7k55:t (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 34330903
    63 7k55:u (3.3) BS01 rna ? GO:0000027 ... P60624 34330903
    64 7k55:v (3.3) BS01 rna ? GO:0000027 ... P68919 34330903
    65 7k55:w (3.3) BS01 rna ? GO:0003735 ... P0A7L8 34330903
    66 7k55:w (3.3) BS02 rna ? GO:0003735 ... P0A7L8 34330903
    67 7k55:x (3.3) BS01 rna ? GO:0000027 ... P0A7M2 34330903
    68 7k55:y (3.3) BS01 rna ? GO:0000027 ... P0A7M6 34330903
    69 7k55:z (3.3) BS01 rna ? GO:0000027 ... P0AG51 34330903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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