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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7evo:1 (2.5) BS01 9B0 ? GO:0000245 ... O75533 38196034
    2 7evo:2 (2.5) BS01 rna ? GO:0000398 ... Q13435 38196034
    3 7evo:6 (2.5) BS01 9B0 ? GO:0000398 ... Q7RTV0 38196034
    4 7evo:6 (2.5) BS02 ZN ? GO:0000398 ... Q7RTV0 38196034
    5 7evo:6 (2.5) BS03 ZN ? GO:0000398 ... Q7RTV0 38196034
    6 7evo:6 (2.5) BS04 ZN ? GO:0000398 ... Q7RTV0 38196034
    7 7evo:C (2.5) BS01 rna ? GO:0000375 ... Q12874 38196034
    8 7evo:C (2.5) BS02 ZN ? GO:0000375 ... Q12874 38196034
    9 7evo:D (2.5) BS01 rna ? GO:0000398 ... O43719 38196034
    10 7evo:G (2.5) BS01 rna ? GO:0000398 ... P08579 38196034
    11 7evo:a (2.5) BS01 rna ? GO:0000245 ... P62316 38196034
    12 7evo:d (2.5) BS01 rna ? GO:0000245 ... P62308 38196034
    13 7evo:e (2.5) BS01 rna ? GO:0000243 ... P62318 38196034
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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