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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zxg:A (2.6) BS01 rna ? GO:0000028 ... P08865 33208940
    2 6zxg:B (2.6) BS01 rna ? GO:0002181 ... P61247 33208940
    3 6zxg:C (2.6) BS01 rna ? GO:0002181 ... P15880 33208940
    4 6zxg:D (2.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33208940
    5 6zxg:E (2.6) BS01 rna ? GO:0002181 ... P62701 33208940
    6 6zxg:F (2.6) BS01 rna ? GO:0000028 ... P46782 33208940
    7 6zxg:F (2.6) BS02 MG ? GO:0000028 ... P46782 33208940
    8 6zxg:G (2.6) BS01 rna ? GO:0000082 ... P62753 33208940
    9 6zxg:H (2.6) BS01 rna ? GO:0001843 ... P62081 33208940
    10 6zxg:I (2.6) BS01 rna ? GO:0000462 ... P62241 33208940
    11 6zxg:J (2.6) BS01 rna ? GO:0002181 ... P46781 33208940
    12 6zxg:K (2.6) BS01 rna ? GO:0002181 ... P46783 33208940
    13 6zxg:L (2.6) BS01 rna ? GO:0002181 ... P62280 33208940
    14 6zxg:M (2.6) BS01 rna ? GO:0002181 ... P25398 33208940
    15 6zxg:N (2.6) BS01 rna ? GO:0002181 ... P62277 33208940
    16 6zxg:O (2.6) BS01 rna ? GO:0000028 ... P62263 33208940
    17 6zxg:O (2.6) BS02 MG ? GO:0000028 ... P62263 33208940
    18 6zxg:P (2.6) BS01 rna ? GO:0000028 ... P62841 33208940
    19 6zxg:Q (2.6) BS01 rna ? GO:0000462 ... P62249 33208940
    20 6zxg:R (2.6) BS01 rna ? GO:0002181 ... P08708 33208940
    21 6zxg:S (2.6) BS01 rna ? GO:0002181 ... P62269 33208940
    22 6zxg:T (2.6) BS01 rna ? GO:0000028 ... P39019 33208940
    23 6zxg:U (2.6) BS01 rna ? GO:0002181 ... P60866 33208940
    24 6zxg:W (2.6) BS01 rna ? GO:0002181 ... P62244 33208940
    25 6zxg:X (2.6) BS01 rna ? GO:0002181 ... P62266 33208940
    26 6zxg:Y (2.6) BS01 rna ? GO:0002181 ... P62847 33208940
    27 6zxg:Z (2.6) BS01 rna ? GO:0002181 ... P62851 33208940
    28 6zxg:b (2.6) BS01 rna ? GO:0000028 ... P42677 33208940
    29 6zxg:c (2.6) BS01 rna ? GO:0000028 ... P62857 33208940
    30 6zxg:d (2.6) BS01 rna ? GO:0002181 ... P62273 33208940
    31 6zxg:d (2.6) BS02 ZN ? GO:0002181 ... P62273 33208940
    32 6zxg:d (2.6) BS03 MG ? GO:0002181 ... P62273 33208940
    33 6zxg:e (2.6) BS01 rna ? GO:0003735 ... P62861 33208940
    34 6zxg:f (2.6) BS01 rna ? GO:0002181 ... P62979 33208940
    35 6zxg:f (2.6) BS02 ZN ? GO:0002181 ... P62979 33208940
    36 6zxg:g (2.6) BS01 rna ? GO:0001891 ... P63244 33208940
    37 6zxg:h (2.6) BS01 rna ? GO:0002181 ... P62854 33208940
    38 6zxg:h (2.6) BS02 ZN ? GO:0002181 ... P62854 33208940
    39 6zxg:h (2.6) BS03 MG ? GO:0002181 ... P62854 33208940
    40 6zxg:j (2.6) BS01 rna ? GO:0003723 ... Q8N9N8 33208940
    41 6zxg:k (2.6) BS01 rna ? GO:0003723 ... Q8N1G4 33208940
    42 6zxg:z (2.6) BS01 rna 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    43 6zxg:z (2.6) BS02 MG 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    44 6zxg:z (2.6) BS03 ATP 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    45 6zxg:z (2.6) BS04 MG 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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