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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6zuo:A (3.1) BS01 rna ? GO:0000028 ... P08865 33908345
    2 6zuo:B (3.1) BS01 rna ? GO:0002181 ... P61247 33908345
    3 6zuo:C (3.1) BS01 rna ? GO:0002181 ... P15880 33908345
    4 6zuo:D (3.1) BS01 rna 4.2.99.18 GO:0000977 ... P23396 33908345
    5 6zuo:E (3.1) BS01 rna ? GO:0002181 ... P62701 33908345
    6 6zuo:F (3.1) BS01 rna ? GO:0000028 ... P46782 33908345
    7 6zuo:G (3.1) BS01 rna ? GO:0000082 ... P62753 33908345
    8 6zuo:H (3.1) BS01 rna ? GO:0001843 ... P62081 33908345
    9 6zuo:I (3.1) BS01 rna ? GO:0000462 ... P62241 33908345
    10 6zuo:J (3.1) BS01 rna ? GO:0002181 ... P46781 33908345
    11 6zuo:K (3.1) BS01 rna ? GO:0002181 ... P46783 33908345
    12 6zuo:L (3.1) BS01 rna ? GO:0002181 ... P62280 33908345
    13 6zuo:M (3.1) BS01 rna ? GO:0002181 ... P25398 33908345
    14 6zuo:N (3.1) BS01 rna ? GO:0002181 ... P62277 33908345
    15 6zuo:O (3.1) BS01 rna ? GO:0000028 ... P62263 33908345
    16 6zuo:P (3.1) BS01 rna ? GO:0000028 ... P62841 33908345
    17 6zuo:Q (3.1) BS01 rna ? GO:0000462 ... P62249 33908345
    18 6zuo:R (3.1) BS01 rna ? GO:0002181 ... P08708 33908345
    19 6zuo:S (3.1) BS01 rna ? GO:0002181 ... P62269 33908345
    20 6zuo:T (3.1) BS01 rna ? GO:0000028 ... P39019 33908345
    21 6zuo:U (3.1) BS01 rna ? GO:0002181 ... P60866 33908345
    22 6zuo:W (3.1) BS01 rna ? GO:0002181 ... P62244 33908345
    23 6zuo:X (3.1) BS01 rna ? GO:0002181 ... P62266 33908345
    24 6zuo:Y (3.1) BS01 rna ? GO:0002181 ... P62847 33908345
    25 6zuo:Z (3.1) BS01 rna ? GO:0002181 ... P62851 33908345
    26 6zuo:b (3.1) BS01 rna ? GO:0000028 ... P42677 33908345
    27 6zuo:c (3.1) BS01 rna ? GO:0000028 ... P62857 33908345
    28 6zuo:d (3.1) BS01 rna ? GO:0002181 ... P62273 33908345
    29 6zuo:d (3.1) BS02 ZN ? GO:0002181 ... P62273 33908345
    30 6zuo:e (3.1) BS01 rna ? GO:0003735 ... P62861 33908345
    31 6zuo:f (3.1) BS01 rna ? GO:0002181 ... P62979 33908345
    32 6zuo:f (3.1) BS02 ZN ? GO:0002181 ... P62979 33908345
    33 6zuo:g (3.1) BS01 rna ? GO:0001891 ... P63244 33908345
    34 6zuo:x (3.1) BS01 rna ? GO:0003676 ... Q9NRX1 33908345
    35 6zuo:y (3.1) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 33908345
    36 6zuo:y (3.1) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 33908345
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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