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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yal:A (3.0) BS01 rna ? GO:0003676 ... G1T2G4 N/A
    2 6yal:A (3.0) BS02 rna ? GO:0003676 ... G1T2G4 N/A
    3 6yal:B (3.0) BS01 rna N/A GO:0000049 ... N/A N/A
    4 6yal:C (3.0) BS01 rna ? GO:0003735 ... G1TLT8 N/A
    5 6yal:D (3.0) BS01 rna ? GO:0003735 ... G1TN72 N/A
    6 6yal:E (3.0) BS01 rna N/A GO:0003723 ... N/A N/A
    7 6yal:F (3.0) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 N/A
    8 6yal:G (3.0) BS01 rna ? GO:0003723 ... G1TK17 N/A
    9 6yal:H (3.0) BS01 rna ? GO:0003723 ... U3KMN4 N/A
    10 6yal:H (3.0) BS02 rna ? GO:0003723 ... U3KMN4 N/A
    11 6yal:I (3.0) BS01 rna ? GO:0003735 ... A0A5K1UJS7 N/A
    12 6yal:J (3.0) BS01 rna ? GO:0003735 ... G1SVB0 N/A
    13 6yal:K (3.0) BS01 rna ? GO:0000462 ... G1TJW1 N/A
    14 6yal:L (3.0) BS01 rna ? GO:0003723 ... B7NZS8 N/A
    15 6yal:M (3.0) BS01 rna ? N/A G1TPV3 N/A
    16 6yal:M (3.0) BS02 rna ? N/A G1TPV3 N/A
    17 6yal:N (3.0) BS01 rna ? GO:0003735 ... G1TRM4 N/A
    18 6yal:O (3.0) BS01 rna ? GO:0003735 ... G1SFR8 N/A
    19 6yal:P (3.0) BS01 rna ? GO:0003735 ... G1SP51 N/A
    20 6yal:Q (3.0) BS01 rna ? GO:0000028 ... G1T1F0 N/A
    21 6yal:R (3.0) BS01 rna ? GO:0000028 ... G1U0Q2 N/A
    22 6yal:R (3.0) BS02 rna ? GO:0000028 ... G1U0Q2 N/A
    23 6yal:S (3.0) BS01 rna ? GO:0000462 ... G1SGX4 N/A
    24 6yal:T (3.0) BS01 rna ? GO:0003735 ... G1TU13 N/A
    25 6yal:U (3.0) BS01 rna ? GO:0003676 ... G1TPG3 N/A
    26 6yal:U (3.0) BS02 rna ? GO:0003676 ... G1TPG3 N/A
    27 6yal:V (3.0) BS01 rna ? GO:0000028 ... G1TN62 N/A
    28 6yal:W (3.0) BS01 rna ? GO:0003723 ... G1SIZ2 N/A
    29 6yal:Y (3.0) BS01 rna ? GO:0003735 ... G1TG89 N/A
    30 6yal:Z (3.0) BS01 rna ? GO:0003735 ... G1SZ47 N/A
    31 6yal:a (3.0) BS01 rna ? GO:0003735 ... G1TS40 N/A
    32 6yal:b (3.0) BS01 rna ? GO:0003729 ... G1TFE8 N/A
    33 6yal:b (3.0) BS02 rna ? GO:0003729 ... G1TFE8 N/A
    34 6yal:c (3.0) BS01 rna ? GO:0000028 ... G1TZ76 N/A
    35 6yal:d (3.0) BS01 rna ? GO:0000028 ... G1TIB4 N/A
    36 6yal:d (3.0) BS02 rna ? GO:0000028 ... G1TIB4 N/A
    37 6yal:e (3.0) BS01 rna ? GO:0003735 ... G1U7M4 N/A
    38 6yal:f (3.0) BS01 rna ? GO:0003735 ... G1SK22 N/A
    39 6yal:g (3.0) BS01 rna ? GO:0001891 ... G1SJB4 N/A
    40 6yal:i (3.0) BS01 rna ? GO:0003735 ... G1T8A2 N/A
    41 6yal:i (3.0) BS02 rna ? GO:0003735 ... G1T8A2 N/A
    42 6yal:j (3.0) BS01 rna ? GO:0003723 ... G1SYS4 N/A
    43 6yal:j (3.0) BS02 rna ? GO:0003723 ... G1SYS4 N/A
    44 6yal:j (3.0) BS03 rna ? GO:0003723 ... G1SYS4 N/A
    45 6yal:k (3.0) BS01 rna ? GO:0000054 ... G1SG72 N/A
    46 6yal:k (3.0) BS02 SF4 ? GO:0000054 ... G1SG72 N/A
    47 6yal:k (3.0) BS03 SF4 ? GO:0000054 ... G1SG72 N/A
    48 6yal:k (3.0) BS04 GNP ? GO:0000054 ... G1SG72 N/A
    49 6yal:k (3.0) BS05 GNP ? GO:0000054 ... G1SG72 N/A
    50 6yal:n (3.0) BS01 rna ? GO:0003735 ... G1TDB3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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