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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6y79:1 (2.96) BS01 UQ9 7.1.1.2 GO:0003954 ... Q9B6E8 33243981
    2 6y79:1 (2.96) BS02 T7X 7.1.1.2 GO:0003954 ... Q9B6E8 33243981
    3 6y79:2 (2.96) BS01 LMN 7.1.1.2 GO:0005739 ... Q9B6C8 33243981
    4 6y79:2 (2.96) BS02 T7X 7.1.1.2 GO:0005739 ... Q9B6C8 33243981
    5 6y79:2 (2.96) BS03 T7X 7.1.1.2 GO:0005739 ... Q9B6C8 33243981
    6 6y79:3 (2.96) BS01 T7X 7.1.1.2 GO:0005739 ... Q9B6C7 33243981
    7 6y79:4 (2.96) BS01 LMN 7.1.1.2 GO:0003954 ... Q9B6D6 33243981
    8 6y79:4 (2.96) BS02 LMN 7.1.1.2 GO:0003954 ... Q9B6D6 33243981
    9 6y79:4 (2.96) BS03 T7X 7.1.1.2 GO:0003954 ... Q9B6D6 33243981
    10 6y79:A (2.96) BS01 SF4 1.6.99.3 GO:0003954 ... F2Z6F1 33243981
    11 6y79:A (2.96) BS02 SF4 1.6.99.3 GO:0003954 ... F2Z6F1 33243981
    12 6y79:A (2.96) BS03 FES 1.6.99.3 GO:0003954 ... F2Z6F1 33243981
    13 6y79:B (2.96) BS01 SF4 7.1.1.2 GO:0005739 ... F2Z660 33243981
    14 6y79:B (2.96) BS02 FMN 7.1.1.2 GO:0005739 ... F2Z660 33243981
    15 6y79:C (2.96) BS01 SF4 1.6.99.3 GO:0005739 ... F2Z626 33243981
    16 6y79:E (2.96) BS01 NDP ? GO:0005739 ... Q6C7X4 33243981
    17 6y79:E (2.96) BS02 T7X ? GO:0005739 ... Q6C7X4 33243981
    18 6y79:H (2.96) BS01 FES 1.6.99.3 GO:0016491 ... F2Z6C0 33243981
    19 6y79:I (2.96) BS01 SF4 1.6.99.3 GO:0003954 ... F2Z619 33243981
    20 6y79:I (2.96) BS02 SF4 1.6.99.3 GO:0003954 ... F2Z619 33243981
    21 6y79:J (2.96) BS01 LMN ? GO:0005739 ... Q6C674 33243981
    22 6y79:J (2.96) BS02 LMN ? GO:0005739 ... Q6C674 33243981
    23 6y79:K (2.96) BS01 SF4 1.6.99.3 GO:0005739 ... Q9UUT7 33243981
    24 6y79:K (2.96) BS02 UQ9 1.6.99.3 GO:0005739 ... Q9UUT7 33243981
    25 6y79:K (2.96) BS03 T7X 1.6.99.3 GO:0005739 ... Q9UUT7 33243981
    26 6y79:M (2.96) BS01 ZN ? GO:0005739 ... Q6C8J9 33243981
    27 6y79:O (2.96) BS01 ZMP ? GO:0000035 ... Q6C926 33243981
    28 6y79:P (2.96) BS01 ZMP ? GO:0005739 ... Q6CI60 33243981
    29 6y79:Q (2.96) BS01 ZMP ? GO:0000035 ... Q6C7X2 33243981
    30 6y79:R (2.96) BS01 ZMP ? GO:0005739 ... Q6C9Z1 33243981
    31 6y79:X (2.96) BS01 T7X ? GO:0016020 ... Q6C4A6 33243981
    32 6y79:b (2.96) BS01 T7X ? N/A A0A1D8NGI5 33243981
    33 6y79:j (2.96) BS01 LMN 1.6.99.3 GO:0016020 ... B5RSK9 33243981
    34 6y79:j (2.96) BS02 LMN 1.6.99.3 GO:0016020 ... B5RSK9 33243981
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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