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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vyz:0 (9.9) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6vyz:1 (9.9) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6vyz:2 (9.9) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6vyz:3 (9.9) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6vyz:4 (9.9) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6vyz:AA (9.9) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    7 6vyz:AA (9.9) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6vyz:AA (9.9) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6vyz:AA (9.9) BS04 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    10 6vyz:AB (9.9) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    11 6vyz:AE (9.9) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    12 6vyz:AE (9.9) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6vyz:AE (9.9) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6vyz:AE (9.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6vyz:AE (9.9) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6vyz:AE (9.9) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    17 6vyz:C (9.9) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    18 6vyz:E (9.9) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    19 6vyz:F (9.9) BS01 rna ? GO:0000028 ... P68679 32820061
    20 6vyz:G (9.9) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    21 6vyz:I (9.9) BS01 rna ? GO:0003676 ... P0A7V3 32820061
    22 6vyz:J (9.9) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    23 6vyz:K (9.9) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    24 6vyz:L (9.9) BS01 rna ? GO:0002181 ... P02358 32820061
    25 6vyz:M (9.9) BS01 rna ? GO:0000028 ... P02359 32820061
    26 6vyz:M (9.9) BS02 rna ? GO:0000028 ... P02359 32820061
    27 6vyz:N (9.9) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    28 6vyz:O (9.9) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    29 6vyz:P (9.9) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    30 6vyz:Q (9.9) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    31 6vyz:R (9.9) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    32 6vyz:S (9.9) BS01 rna ? GO:0000028 ... P0AG59 32820061
    33 6vyz:T (9.9) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    34 6vyz:T (9.9) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    35 6vyz:U (9.9) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    36 6vyz:V (9.9) BS01 rna ? GO:0000028 ... P0AG63 32820061
    37 6vyz:W (9.9) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    38 6vyz:X (9.9) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    39 6vyz:X (9.9) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    40 6vyz:b (9.9) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    41 6vyz:b (9.9) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    42 6vyz:c (9.9) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    43 6vyz:e (9.9) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    44 6vyz:f (9.9) BS01 rna ? GO:0000027 ... P0AG51 32820061
    45 6vyz:f (9.9) BS02 rna ? GO:0000027 ... P0AG51 32820061
    46 6vyz:g (9.9) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    47 6vyz:h (9.9) BS01 rna ? GO:0000027 ... P60422 32820061
    48 6vyz:i (9.9) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    49 6vyz:j (9.9) BS01 rna ? GO:0000027 ... P60438 32820061
    50 6vyz:k (9.9) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    51 6vyz:l (9.9) BS01 rna ? GO:0001070 ... P60723 32820061
    52 6vyz:m (9.9) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    53 6vyz:n (9.9) BS01 rna ? GO:0000027 ... P62399 32820061
    54 6vyz:n (9.9) BS02 rna ? GO:0000027 ... P62399 32820061
    55 6vyz:o (9.9) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    56 6vyz:p (9.9) BS01 rna ? GO:0000027 ... P0AG55 32820061
    57 6vyz:q (9.9) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    58 6vyz:r (9.9) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    59 6vyz:s (9.9) BS01 rna ? GO:0002181 ... P0AA10 32820061
    60 6vyz:t (9.9) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    61 6vyz:t (9.9) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    62 6vyz:u (9.9) BS01 rna ? GO:0002181 ... P02413 32820061
    63 6vyz:v (9.9) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    64 6vyz:v (9.9) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    65 6vyz:w (9.9) BS01 rna ? GO:0000027 ... P0AG44 32820061
    66 6vyz:x (9.9) BS01 rna ? GO:0002181 ... P0C018 32820061
    67 6vyz:x (9.9) BS02 rna ? GO:0002181 ... P0C018 32820061
    68 6vyz:y (9.9) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    69 6vyz:z (9.9) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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