Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6sgc:A2 (2.8) BS01 rna ? GO:0002181 ... G1TT27 31768042
    2 6sgc:A2 (2.8) BS02 rna ? GO:0002181 ... G1TT27 31768042
    3 6sgc:B (2.8) BS01 rna ? GO:0000470 ... G1SKZ8 31768042
    4 6sgc:B (2.8) BS02 rna ? GO:0000470 ... G1SKZ8 31768042
    5 6sgc:B1 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    6 6sgc:B2 (2.8) BS01 rna ? GO:0003723 ... G1TL06 31768042
    7 6sgc:C1 (2.8) BS01 rna ? GO:0003735 ... G1SS70 31768042
    8 6sgc:C2 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    9 6sgc:C2 (2.8) BS02 rna N/A GO:0003735 ... N/A 31768042
    10 6sgc:D1 (2.8) BS01 rna N/A GO:0003723 ... N/A 31768042
    11 6sgc:D2 (2.8) BS01 rna ? GO:0000027 ... P19949 31768042
    12 6sgc:D2 (2.8) BS02 rna ? GO:0000027 ... P19949 31768042
    13 6sgc:E1 (2.8) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 31768042
    14 6sgc:E2 (2.8) BS01 rna ? GO:0000027 ... G1SKF7 31768042
    15 6sgc:F1 (2.8) BS01 rna ? GO:0003723 ... G1TK17 31768042
    16 6sgc:F2 (2.8) BS01 rna ? GO:0000463 ... G1TUB1 31768042
    17 6sgc:F2 (2.8) BS02 rna ? GO:0000463 ... G1TUB1 31768042
    18 6sgc:G1 (2.8) BS01 rna ? GO:0000028 ... G1TFM5 31768042
    19 6sgc:G2 (2.8) BS01 rna N/A GO:0042254 ... N/A 31768042
    20 6sgc:G2 (2.8) BS02 rna N/A GO:0042254 ... N/A 31768042
    21 6sgc:H1 (2.8) BS01 rna ? GO:0000082 ... G1TM55 31768042
    22 6sgc:H2 (2.8) BS01 rna ? GO:0002181 ... G1SWI6 31768042
    23 6sgc:I1 (2.8) BS01 rna ? GO:0003735 ... G1SVB0 31768042
    24 6sgc:I2 (2.8) BS01 rna ? GO:0000027 ... B7NZQ2 31768042
    25 6sgc:I2 (2.8) BS02 rna ? GO:0000027 ... B7NZQ2 31768042
    26 6sgc:J1 (2.8) BS01 rna ? GO:0000462 ... G1TJW1 31768042
    27 6sgc:J1 (2.8) BS02 rna ? GO:0000462 ... G1TJW1 31768042
    28 6sgc:J2 (2.8) BS01 rna ? GO:0003723 ... G1TUB8 31768042
    29 6sgc:J2 (2.8) BS02 rna ? GO:0003723 ... G1TUB8 31768042
    30 6sgc:J2 (2.8) BS03 rna ? GO:0003723 ... G1TUB8 31768042
    31 6sgc:K1 (2.8) BS01 rna ? GO:0003723 ... B7NZS8 31768042
    32 6sgc:L1 (2.8) BS01 rna ? GO:0003723 ... G1TPV3 31768042
    33 6sgc:L2 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    34 6sgc:L2 (2.8) BS02 rna N/A GO:0003735 ... N/A 31768042
    35 6sgc:M1 (2.8) BS01 rna ? GO:0003735 ... G1TRM4 31768042
    36 6sgc:M1 (2.8) BS02 MG ? GO:0003735 ... G1TRM4 31768042
    37 6sgc:M2 (2.8) BS01 rna ? GO:0003723 ... G1SZ12 31768042
    38 6sgc:N1 (2.8) BS01 rna ? GO:0003735 ... G1SFR8 31768042
    39 6sgc:N2 (2.8) BS01 rna ? GO:0002181 ... G1T0C1 31768042
    40 6sgc:N2 (2.8) BS02 rna ? GO:0002181 ... G1T0C1 31768042
    41 6sgc:O1 (2.8) BS01 rna ? GO:0003735 ... G1SP51 31768042
    42 6sgc:O1 (2.8) BS02 rna ? GO:0003735 ... G1SP51 31768042
    43 6sgc:O2 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    44 6sgc:P1 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    45 6sgc:P2 (2.8) BS01 rna ? GO:0002181 ... G1SCJ6 31768042
    46 6sgc:P2 (2.8) BS02 rna ? GO:0002181 ... G1SCJ6 31768042
    47 6sgc:Q1 (2.8) BS01 rna ? GO:0000028 ... G1U0Q2 31768042
    48 6sgc:Q1 (2.8) BS02 rna ? GO:0000028 ... G1U0Q2 31768042
    49 6sgc:Q2 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    50 6sgc:R1 (2.8) BS01 rna ? GO:0000462 ... G1SGX4 31768042
    51 6sgc:R2 (2.8) BS01 rna N/A GO:0003723 ... N/A 31768042
    52 6sgc:R2 (2.8) BS02 rna N/A GO:0003723 ... N/A 31768042
    53 6sgc:S1 (2.8) BS01 rna ? GO:0003735 ... G1TU13 31768042
    54 6sgc:S2 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    55 6sgc:S2 (2.8) BS02 rna N/A GO:0003735 ... N/A 31768042
    56 6sgc:T1 (2.8) BS01 rna ? GO:0003676 ... G1TPG3 31768042
    57 6sgc:T2 (2.8) BS01 rna ? GO:0003735 ... G1SHQ2 31768042
    58 6sgc:T2 (2.8) BS02 rna ? GO:0003735 ... G1SHQ2 31768042
    59 6sgc:U1 (2.8) BS01 rna ? GO:0000028 ... G1TN62 31768042
    60 6sgc:U2 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    61 6sgc:V1 (2.8) BS01 rna ? GO:0003723 ... G1SIZ2 31768042
    62 6sgc:V2 (2.8) BS01 rna ? GO:0000122 ... G1T6D1 31768042
    63 6sgc:W2 (2.8) BS01 rna ? GO:0000027 ... G1SE28 31768042
    64 6sgc:X1 (2.8) BS01 rna ? GO:0003735 ... G1TG89 31768042
    65 6sgc:X2 (2.8) BS01 rna ? GO:0000027 ... G1SE76 31768042
    66 6sgc:X2 (2.8) BS02 rna ? GO:0000027 ... G1SE76 31768042
    67 6sgc:Y1 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    68 6sgc:Y2 (2.8) BS01 rna ? GO:0002181 ... G1SQH0 31768042
    69 6sgc:Y2 (2.8) BS02 rna ? GO:0002181 ... G1SQH0 31768042
    70 6sgc:Z1 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    71 6sgc:Z2 (2.8) BS01 rna ? GO:0003735 ... G1TXF6 31768042
    72 6sgc:a1 (2.8) BS01 rna ? GO:0003735 ... G1TDB3 31768042
    73 6sgc:a1 (2.8) BS02 rna ? GO:0003735 ... G1TDB3 31768042
    74 6sgc:a2 (2.8) BS01 rna ? GO:0003735 ... G1SNY0 31768042
    75 6sgc:b1 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    76 6sgc:b1 (2.8) BS02 ZN N/A GO:0003735 ... N/A 31768042
    77 6sgc:b2 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    78 6sgc:c1 (2.8) BS01 rna ? GO:0000028 ... G1TZ76 31768042
    79 6sgc:c2 (2.8) BS01 rna ? GO:0002181 ... G1TDL2 31768042
    80 6sgc:d1 (2.8) BS01 rna ? GO:0000028 ... G1TIB4 31768042
    81 6sgc:d2 (2.8) BS01 rna ? GO:0002181 ... G1SHG0 31768042
    82 6sgc:e1 (2.8) BS01 rna ? GO:0003735 ... G1U7M4 31768042
    83 6sgc:e1 (2.8) BS02 ZN ? GO:0003735 ... G1U7M4 31768042
    84 6sgc:e2 (2.8) BS01 rna ? GO:0003735 ... G1TUN8 31768042
    85 6sgc:f1 (2.8) BS01 rna ? GO:0003735 ... G1T8A2 31768042
    86 6sgc:f2 (2.8) BS01 rna ? GO:0000049 ... G1SF08 31768042
    87 6sgc:g1 (2.8) BS01 rna ? GO:0003723 ... G1SK22 31768042
    88 6sgc:g2 (2.8) BS01 rna ? GO:0003735 ... G1TXG5 31768042
    89 6sgc:h1 (2.8) BS01 rna ? GO:0001891 ... G1SJB4 31768042
    90 6sgc:h2 (2.8) BS01 rna ? GO:0000463 ... G1SIT5 31768042
    91 6sgc:h2 (2.8) BS02 rna ? GO:0000463 ... G1SIT5 31768042
    92 6sgc:i2 (2.8) BS01 rna ? GO:0002181 ... G1TTQ5 31768042
    93 6sgc:j2 (2.8) BS01 rna ? GO:0003723 ... U3KPD5 31768042
    94 6sgc:j2 (2.8) BS02 rna ? GO:0003723 ... U3KPD5 31768042
    95 6sgc:j2 (2.8) BS03 ZN ? GO:0003723 ... U3KPD5 31768042
    96 6sgc:k2 (2.8) BS01 rna ? GO:0003735 ... G1U001 31768042
    97 6sgc:l2 (2.8) BS01 rna ? GO:0003735 ... G1TTN1 31768042
    98 6sgc:l2 (2.8) BS02 rna ? GO:0003735 ... G1TTN1 31768042
    99 6sgc:m2 (2.8) BS01 rna N/A GO:0003735 ... N/A 31768042
    100 6sgc:m2 (2.8) BS02 ZN N/A GO:0003735 ... N/A 31768042
    101 6sgc:o2 (2.8) BS01 rna ? GO:0003735 ... G1T040 31768042
    102 6sgc:o2 (2.8) BS02 rna ? GO:0003735 ... G1T040 31768042
    103 6sgc:o2 (2.8) BS03 ZN ? GO:0003735 ... G1T040 31768042
    104 6sgc:p2 (2.8) BS01 rna ? GO:0003735 ... G1SY53 31768042
    105 6sgc:p2 (2.8) BS02 ZN ? GO:0003735 ... G1SY53 31768042
    106 6sgc:r2 (2.8) BS01 rna ? GO:0003735 ... G1U7L1 31768042
    107 6sgc:s2 (2.8) BS01 rna N/A GO:0042254 ... N/A 31768042
    108 6sgc:t2 (2.8) BS01 rna ? GO:0003723 ... G1SMR7 31768042
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218