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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 279 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6j3y:11 (3.3) BS01 CLA N/A GO:0009765 ... N/A 31358960
    2 6j3y:11 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    3 6j3y:11 (3.3) BS03 CLA N/A GO:0009765 ... N/A 31358960
    4 6j3y:11 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    5 6j3y:11 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    6 6j3y:11 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    7 6j3y:11 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    8 6j3y:11 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    9 6j3y:11 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10 6j3y:11 (3.3) BS10 A86 N/A GO:0009765 ... N/A 31358960
    11 6j3y:11 (3.3) BS11 A86 N/A GO:0009765 ... N/A 31358960
    12 6j3y:11 (3.3) BS12 A86 N/A GO:0009765 ... N/A 31358960
    13 6j3y:11 (3.3) BS13 A86 N/A GO:0009765 ... N/A 31358960
    14 6j3y:11 (3.3) BS14 A86 N/A GO:0009765 ... N/A 31358960
    15 6j3y:11 (3.3) BS15 CLA N/A GO:0009765 ... N/A 31358960
    16 6j3y:11 (3.3) BS16 A86 N/A GO:0009765 ... N/A 31358960
    17 6j3y:11 (3.3) BS17 CLA N/A GO:0009765 ... N/A 31358960
    18 6j3y:11 (3.3) BS18 A86 N/A GO:0009765 ... N/A 31358960
    19 6j3y:11 (3.3) BS19 CLA N/A GO:0009765 ... N/A 31358960
    20 6j3y:11 (3.3) BS20 A86 N/A GO:0009765 ... N/A 31358960
    21 6j3y:12 (3.3) BS01 A86 N/A GO:0009765 ... N/A 31358960
    22 6j3y:12 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    23 6j3y:12 (3.3) BS03 CLA N/A GO:0009765 ... N/A 31358960
    24 6j3y:12 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    25 6j3y:12 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    26 6j3y:12 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    27 6j3y:12 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    28 6j3y:12 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    29 6j3y:12 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    30 6j3y:12 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    31 6j3y:12 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    32 6j3y:12 (3.3) BS12 A86 N/A GO:0009765 ... N/A 31358960
    33 6j3y:12 (3.3) BS13 A86 N/A GO:0009765 ... N/A 31358960
    34 6j3y:12 (3.3) BS14 A86 N/A GO:0009765 ... N/A 31358960
    35 6j3y:12 (3.3) BS15 A86 N/A GO:0009765 ... N/A 31358960
    36 6j3y:12 (3.3) BS16 CLA N/A GO:0009765 ... N/A 31358960
    37 6j3y:12 (3.3) BS17 A86 N/A GO:0009765 ... N/A 31358960
    38 6j3y:12 (3.3) BS18 CLA N/A GO:0009765 ... N/A 31358960
    39 6j3y:12 (3.3) BS19 A86 N/A GO:0009765 ... N/A 31358960
    40 6j3y:13 (3.3) BS01 CLA N/A GO:0009765 ... N/A 31358960
    41 6j3y:13 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    42 6j3y:13 (3.3) BS03 CLA N/A GO:0009765 ... N/A 31358960
    43 6j3y:13 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    44 6j3y:13 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    45 6j3y:13 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    46 6j3y:13 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    47 6j3y:13 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    48 6j3y:13 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    49 6j3y:13 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    50 6j3y:13 (3.3) BS11 A86 N/A GO:0009765 ... N/A 31358960
    51 6j3y:13 (3.3) BS12 A86 N/A GO:0009765 ... N/A 31358960
    52 6j3y:13 (3.3) BS13 A86 N/A GO:0009765 ... N/A 31358960
    53 6j3y:13 (3.3) BS14 A86 N/A GO:0009765 ... N/A 31358960
    54 6j3y:13 (3.3) BS15 A86 N/A GO:0009765 ... N/A 31358960
    55 6j3y:13 (3.3) BS16 A86 N/A GO:0009765 ... N/A 31358960
    56 6j3y:13 (3.3) BS17 CLA N/A GO:0009765 ... N/A 31358960
    57 6j3y:13 (3.3) BS18 A86 N/A GO:0009765 ... N/A 31358960
    58 6j3y:14 (3.3) BS01 CLA N/A GO:0009765 ... N/A 31358960
    59 6j3y:14 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    60 6j3y:14 (3.3) BS03 A86 N/A GO:0009765 ... N/A 31358960
    61 6j3y:14 (3.3) BS04 A86 N/A GO:0009765 ... N/A 31358960
    62 6j3y:14 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    63 6j3y:14 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    64 6j3y:14 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    65 6j3y:14 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    66 6j3y:14 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    67 6j3y:14 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    68 6j3y:14 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    69 6j3y:14 (3.3) BS12 CLA N/A GO:0009765 ... N/A 31358960
    70 6j3y:14 (3.3) BS13 CLA N/A GO:0009765 ... N/A 31358960
    71 6j3y:14 (3.3) BS14 A86 N/A GO:0009765 ... N/A 31358960
    72 6j3y:14 (3.3) BS15 A86 N/A GO:0009765 ... N/A 31358960
    73 6j3y:14 (3.3) BS16 A86 N/A GO:0009765 ... N/A 31358960
    74 6j3y:14 (3.3) BS17 A86 N/A GO:0009765 ... N/A 31358960
    75 6j3y:14 (3.3) BS18 A86 N/A GO:0009765 ... N/A 31358960
    76 6j3y:31 (3.3) BS01 CLA N/A GO:0009765 ... N/A 31358960
    77 6j3y:31 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    78 6j3y:31 (3.3) BS03 CLA N/A GO:0009765 ... N/A 31358960
    79 6j3y:31 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    80 6j3y:31 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    81 6j3y:31 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    82 6j3y:31 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    83 6j3y:31 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    84 6j3y:31 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    85 6j3y:31 (3.3) BS10 A86 N/A GO:0009765 ... N/A 31358960
    86 6j3y:31 (3.3) BS11 A86 N/A GO:0009765 ... N/A 31358960
    87 6j3y:31 (3.3) BS12 A86 N/A GO:0009765 ... N/A 31358960
    88 6j3y:31 (3.3) BS13 A86 N/A GO:0009765 ... N/A 31358960
    89 6j3y:31 (3.3) BS14 A86 N/A GO:0009765 ... N/A 31358960
    90 6j3y:31 (3.3) BS15 CLA N/A GO:0009765 ... N/A 31358960
    91 6j3y:31 (3.3) BS16 A86 N/A GO:0009765 ... N/A 31358960
    92 6j3y:31 (3.3) BS17 CLA N/A GO:0009765 ... N/A 31358960
    93 6j3y:31 (3.3) BS18 A86 N/A GO:0009765 ... N/A 31358960
    94 6j3y:31 (3.3) BS19 A86 N/A GO:0009765 ... N/A 31358960
    95 6j3y:32 (3.3) BS01 A86 N/A GO:0009765 ... N/A 31358960
    96 6j3y:32 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    97 6j3y:32 (3.3) BS03 CLA N/A GO:0009765 ... N/A 31358960
    98 6j3y:32 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    99 6j3y:32 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    100 6j3y:32 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    101 6j3y:32 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    102 6j3y:32 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    103 6j3y:32 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    104 6j3y:32 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    105 6j3y:32 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    106 6j3y:32 (3.3) BS12 A86 N/A GO:0009765 ... N/A 31358960
    107 6j3y:32 (3.3) BS13 A86 N/A GO:0009765 ... N/A 31358960
    108 6j3y:32 (3.3) BS14 A86 N/A GO:0009765 ... N/A 31358960
    109 6j3y:32 (3.3) BS15 A86 N/A GO:0009765 ... N/A 31358960
    110 6j3y:32 (3.3) BS16 A86 N/A GO:0009765 ... N/A 31358960
    111 6j3y:32 (3.3) BS17 CLA N/A GO:0009765 ... N/A 31358960
    112 6j3y:32 (3.3) BS18 A86 N/A GO:0009765 ... N/A 31358960
    113 6j3y:32 (3.3) BS19 CLA N/A GO:0009765 ... N/A 31358960
    114 6j3y:33 (3.3) BS01 A86 N/A GO:0009765 ... N/A 31358960
    115 6j3y:33 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    116 6j3y:33 (3.3) BS03 A86 N/A GO:0009765 ... N/A 31358960
    117 6j3y:33 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    118 6j3y:33 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    119 6j3y:33 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    120 6j3y:33 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    121 6j3y:33 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    122 6j3y:33 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    123 6j3y:33 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    124 6j3y:33 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    125 6j3y:33 (3.3) BS12 CLA N/A GO:0009765 ... N/A 31358960
    126 6j3y:33 (3.3) BS13 A86 N/A GO:0009765 ... N/A 31358960
    127 6j3y:33 (3.3) BS14 A86 N/A GO:0009765 ... N/A 31358960
    128 6j3y:33 (3.3) BS15 A86 N/A GO:0009765 ... N/A 31358960
    129 6j3y:33 (3.3) BS16 A86 N/A GO:0009765 ... N/A 31358960
    130 6j3y:33 (3.3) BS17 A86 N/A GO:0009765 ... N/A 31358960
    131 6j3y:33 (3.3) BS18 CLA N/A GO:0009765 ... N/A 31358960
    132 6j3y:33 (3.3) BS19 A86 N/A GO:0009765 ... N/A 31358960
    133 6j3y:34 (3.3) BS01 CLA N/A GO:0009765 ... N/A 31358960
    134 6j3y:34 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    135 6j3y:34 (3.3) BS03 A86 N/A GO:0009765 ... N/A 31358960
    136 6j3y:34 (3.3) BS04 A86 N/A GO:0009765 ... N/A 31358960
    137 6j3y:34 (3.3) BS05 A86 N/A GO:0009765 ... N/A 31358960
    138 6j3y:34 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    139 6j3y:34 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    140 6j3y:34 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    141 6j3y:34 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    142 6j3y:34 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    143 6j3y:34 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    144 6j3y:34 (3.3) BS12 CLA N/A GO:0009765 ... N/A 31358960
    145 6j3y:34 (3.3) BS13 CLA N/A GO:0009765 ... N/A 31358960
    146 6j3y:34 (3.3) BS14 CLA N/A GO:0009765 ... N/A 31358960
    147 6j3y:34 (3.3) BS15 A86 N/A GO:0009765 ... N/A 31358960
    148 6j3y:34 (3.3) BS16 A86 N/A GO:0009765 ... N/A 31358960
    149 6j3y:34 (3.3) BS17 A86 N/A GO:0009765 ... N/A 31358960
    150 6j3y:34 (3.3) BS18 A86 N/A GO:0009765 ... N/A 31358960
    151 6j3y:A (3.3) BS01 peptide N/A GO:0009055 ... N/A 31358960
    152 6j3y:A (3.3) BS02 FE2 N/A GO:0009055 ... N/A 31358960
    153 6j3y:A (3.3) BS03 CLA N/A GO:0009055 ... N/A 31358960
    154 6j3y:A (3.3) BS04 PHO N/A GO:0009055 ... N/A 31358960
    155 6j3y:A (3.3) BS05 CLA N/A GO:0009055 ... N/A 31358960
    156 6j3y:A (3.3) BS06 BCT N/A GO:0009055 ... N/A 31358960
    157 6j3y:A (3.3) BS07 OEX N/A GO:0009055 ... N/A 31358960
    158 6j3y:A (3.3) BS08 CLA N/A GO:0009055 ... N/A 31358960
    159 6j3y:A (3.3) BS09 CLA N/A GO:0009055 ... N/A 31358960
    160 6j3y:A (3.3) BS10 PHO N/A GO:0009055 ... N/A 31358960
    161 6j3y:B (3.3) BS01 CLA N/A GO:0009521 ... N/A 31358960
    162 6j3y:B (3.3) BS02 CLA N/A GO:0009521 ... N/A 31358960
    163 6j3y:B (3.3) BS03 CLA N/A GO:0009521 ... N/A 31358960
    164 6j3y:B (3.3) BS04 CLA N/A GO:0009521 ... N/A 31358960
    165 6j3y:B (3.3) BS05 CLA N/A GO:0009521 ... N/A 31358960
    166 6j3y:B (3.3) BS06 CLA N/A GO:0009521 ... N/A 31358960
    167 6j3y:B (3.3) BS07 CLA N/A GO:0009521 ... N/A 31358960
    168 6j3y:B (3.3) BS08 CLA N/A GO:0009521 ... N/A 31358960
    169 6j3y:B (3.3) BS09 CLA N/A GO:0009521 ... N/A 31358960
    170 6j3y:B (3.3) BS10 CLA N/A GO:0009521 ... N/A 31358960
    171 6j3y:B (3.3) BS11 CLA N/A GO:0009521 ... N/A 31358960
    172 6j3y:B (3.3) BS12 CLA N/A GO:0009521 ... N/A 31358960
    173 6j3y:B (3.3) BS13 CLA N/A GO:0009521 ... N/A 31358960
    174 6j3y:B (3.3) BS14 CLA N/A GO:0009521 ... N/A 31358960
    175 6j3y:B (3.3) BS15 CLA N/A GO:0009521 ... N/A 31358960
    176 6j3y:B (3.3) BS16 CLA N/A GO:0009521 ... N/A 31358960
    177 6j3y:C (3.3) BS01 OEX N/A GO:0009521 ... N/A 31358960
    178 6j3y:C (3.3) BS02 CLA N/A GO:0009521 ... N/A 31358960
    179 6j3y:C (3.3) BS03 CLA N/A GO:0009521 ... N/A 31358960
    180 6j3y:C (3.3) BS04 CLA N/A GO:0009521 ... N/A 31358960
    181 6j3y:C (3.3) BS05 CLA N/A GO:0009521 ... N/A 31358960
    182 6j3y:C (3.3) BS06 CLA N/A GO:0009521 ... N/A 31358960
    183 6j3y:C (3.3) BS07 CLA N/A GO:0009521 ... N/A 31358960
    184 6j3y:C (3.3) BS08 CLA N/A GO:0009521 ... N/A 31358960
    185 6j3y:C (3.3) BS09 CLA N/A GO:0009521 ... N/A 31358960
    186 6j3y:C (3.3) BS10 CLA N/A GO:0009521 ... N/A 31358960
    187 6j3y:C (3.3) BS11 CLA N/A GO:0009521 ... N/A 31358960
    188 6j3y:C (3.3) BS12 CLA N/A GO:0009521 ... N/A 31358960
    189 6j3y:C (3.3) BS13 CLA N/A GO:0009521 ... N/A 31358960
    190 6j3y:C (3.3) BS14 CLA N/A GO:0009521 ... N/A 31358960
    191 6j3y:C (3.3) BS15 CLA N/A GO:0009521 ... N/A 31358960
    192 6j3y:D (3.3) BS01 peptide N/A GO:0009523 ... N/A 31358960
    193 6j3y:D (3.3) BS02 FE2 N/A GO:0009523 ... N/A 31358960
    194 6j3y:D (3.3) BS03 PHO N/A GO:0009523 ... N/A 31358960
    195 6j3y:D (3.3) BS04 BCT N/A GO:0009523 ... N/A 31358960
    196 6j3y:D (3.3) BS05 CLA N/A GO:0009523 ... N/A 31358960
    197 6j3y:D (3.3) BS06 CLA N/A GO:0009523 ... N/A 31358960
    198 6j3y:D (3.3) BS07 CLA N/A GO:0009523 ... N/A 31358960
    199 6j3y:D (3.3) BS08 PHO N/A GO:0009523 ... N/A 31358960
    200 6j3y:D (3.3) BS09 CLA N/A GO:0009523 ... N/A 31358960
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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