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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6car:B (3.4) BS01 rna ? GO:0003735 ... P80371 30113694
    2 6car:B (3.4) BS02 MG ? GO:0003735 ... P80371 30113694
    3 6car:C (3.4) BS01 rna ? GO:0003676 ... P80372 30113694
    4 6car:C (3.4) BS02 MG ? GO:0003676 ... P80372 30113694
    5 6car:C (3.4) BS03 MG ? GO:0003676 ... P80372 30113694
    6 6car:D (3.4) BS01 rna ? GO:0003723 ... P80373 30113694
    7 6car:D (3.4) BS02 MG ? GO:0003723 ... P80373 30113694
    8 6car:E (3.4) BS01 rna ? GO:0003723 ... Q5SHQ5 30113694
    9 6car:F (3.4) BS01 rna ? GO:0003735 ... Q5SLP8 30113694
    10 6car:G (3.4) BS01 rna ? GO:0000028 ... P17291 30113694
    11 6car:H (3.4) BS01 rna ? GO:0003735 ... P0DOY9 30113694
    12 6car:I (3.4) BS01 rna ? GO:0000049 ... P80374 30113694
    13 6car:J (3.4) BS01 rna ? GO:0000049 ... Q5SHN7 30113694
    14 6car:J (3.4) BS02 MG ? GO:0000049 ... Q5SHN7 30113694
    15 6car:K (3.4) BS01 rna ? GO:0003735 ... P80376 30113694
    16 6car:K (3.4) BS02 MG ? GO:0003735 ... P80376 30113694
    17 6car:L (3.4) BS01 rna ? GO:0000049 ... Q5SHN3 30113694
    18 6car:M (3.4) BS01 rna ? GO:0000049 ... P80377 30113694
    19 6car:N (3.4) BS01 rna ? GO:0003735 ... P0DOY6 30113694
    20 6car:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 30113694
    21 6car:O (3.4) BS01 rna ? GO:0003735 ... Q5SJ76 30113694
    22 6car:P (3.4) BS01 rna ? GO:0003735 ... Q5SJH3 30113694
    23 6car:Q (3.4) BS01 rna ? GO:0003735 ... P0DOY7 30113694
    24 6car:Q (3.4) BS02 MG ? GO:0003735 ... P0DOY7 30113694
    25 6car:R (3.4) BS01 rna ? GO:0003735 ... Q5SLQ0 30113694
    26 6car:S (3.4) BS01 rna ? GO:0000028 ... Q5SHP2 30113694
    27 6car:T (3.4) BS01 rna ? GO:0003723 ... P80380 30113694
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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