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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5z3g:D (3.65) BS01 rna ? GO:0000463 ... P40693 29557065
    2 5z3g:E (3.65) BS01 rna ? GO:0000463 ... P53927 29557065
    3 5z3g:F (3.65) BS01 rna ? GO:0000027 ... P14126 29557065
    4 5z3g:G (3.65) BS01 rna ? GO:0002181 ... P10664 29557065
    5 5z3g:G (3.65) BS02 rna ? GO:0002181 ... P10664 29557065
    6 5z3g:H (3.65) BS01 rna ? GO:0000462 ... P38779 29557065
    7 5z3g:I (3.65) BS01 rna ? GO:0000027 ... Q02326 29557065
    8 5z3g:J (3.65) BS01 rna ? GO:0000463 ... P05737 29557065
    9 5z3g:K (3.65) BS01 rna ? GO:0000470 ... P17076 29557065
    10 5z3g:K (3.65) BS02 rna ? GO:0000470 ... P17076 29557065
    11 5z3g:L (3.65) BS01 rna ? GO:0002181 ... P05738 29557065
    12 5z3g:M (3.65) BS01 rna ? GO:0000462 ... P53261 29557065
    13 5z3g:M (3.65) BS02 rna ? GO:0000462 ... P53261 29557065
    14 5z3g:N (3.65) BS01 rna ? GO:0000054 ... Q12522 29557065
    15 5z3g:O (3.65) BS01 rna ? GO:0000055 ... P38805 29557065
    16 5z3g:P (3.65) BS01 rna ? GO:0002181 ... Q12690 29557065
    17 5z3g:P (3.65) BS02 rna ? GO:0002181 ... Q12690 29557065
    18 5z3g:Q (3.65) BS01 rna ? GO:0000027 ... P36105 29557065
    19 5z3g:R (3.65) BS01 rna ? GO:0002181 ... P05748 29557065
    20 5z3g:R (3.65) BS02 rna ? GO:0002181 ... P05748 29557065
    21 5z3g:S (3.65) BS01 rna ? GO:0000470 ... P26784 29557065
    22 5z3g:T (3.65) BS01 rna ? GO:0000448 ... P05740 29557065
    23 5z3g:T (3.65) BS02 rna ? GO:0000448 ... P05740 29557065
    24 5z3g:U (3.65) BS01 rna ? GO:0002181 ... P0CX49 29557065
    25 5z3g:V (3.65) BS01 rna ? GO:0003674 ... P53136 29557065
    26 5z3g:W (3.65) BS01 rna ? GO:0002181 ... P0CX23 29557065
    27 5z3g:X (3.65) BS01 rna ? GO:0003674 ... P35178 29557065
    28 5z3g:Y (3.65) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 29557065
    29 5z3g:Z (3.65) BS01 rna ? GO:0000460 ... P10962 29557065
    30 5z3g:a (3.65) BS01 rna ? GO:0000027 ... Q08235 29557065
    31 5z3g:c (3.65) BS01 rna ? GO:0002181 ... P05743 29557065
    32 5z3g:c (3.65) BS02 rna ? GO:0002181 ... P05743 29557065
    33 5z3g:d (3.65) BS01 rna N/A N/A N/A 29557065
    34 5z3g:i (3.65) BS01 rna ? GO:0002181 ... P38061 29557065
    35 5z3g:j (3.65) BS01 rna ? GO:0000027 ... P05744 29557065
    36 5z3g:l (3.65) BS01 rna ? GO:0000463 ... P0CX84 29557065
    37 5z3g:l (3.65) BS02 rna ? GO:0000463 ... P0CX84 29557065
    38 5z3g:m (3.65) BS01 rna ? GO:0002181 ... P05745 29557065
    39 5z3g:n (3.65) BS01 rna ? GO:0000448 ... P49166 29557065
    40 5z3g:n (3.65) BS02 rna ? GO:0000448 ... P49166 29557065
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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