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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 169 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5y5s:0 (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    2 5y5s:0 (1.9) BS02 CRT ? GO:0005515 ... D2Z0P1 29618814
    3 5y5s:0 (1.9) BS03 BCL ? GO:0005515 ... D2Z0P1 29618814
    4 5y5s:1 (1.9) BS01 CA ? GO:0005515 ... D2Z0P2 29618814
    5 5y5s:1 (1.9) BS02 BCL ? GO:0005515 ... D2Z0P2 29618814
    6 5y5s:1 (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    7 5y5s:1 (1.9) BS04 CRT ? GO:0005515 ... D2Z0P2 29618814
    8 5y5s:2 (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    9 5y5s:2 (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    10 5y5s:2 (1.9) BS03 CRT ? GO:0005515 ... D2Z0P1 29618814
    11 5y5s:3 (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    12 5y5s:3 (1.9) BS02 CRT ? GO:0005515 ... D2Z0P2 29618814
    13 5y5s:3 (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    14 5y5s:3 (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    15 5y5s:3 (1.9) BS05 BCL ? GO:0005515 ... D2Z0P2 29618814
    16 5y5s:3 (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    17 5y5s:4 (1.9) BS01 CRT ? GO:0005515 ... D2Z0P1 29618814
    18 5y5s:4 (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    19 5y5s:4 (1.9) BS03 BCL ? GO:0005515 ... D2Z0P1 29618814
    20 5y5s:5 (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    21 5y5s:5 (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    22 5y5s:5 (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    23 5y5s:5 (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    24 5y5s:5 (1.9) BS05 CRT ? GO:0005515 ... D2Z0P2 29618814
    25 5y5s:5 (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    26 5y5s:6 (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    27 5y5s:6 (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    28 5y5s:6 (1.9) BS03 CRT ? GO:0005515 ... D2Z0P1 29618814
    29 5y5s:7 (1.9) BS01 UQ8 ? GO:0005515 ... D2Z0P2 29618814
    30 5y5s:7 (1.9) BS02 CRT ? GO:0005515 ... D2Z0P2 29618814
    31 5y5s:7 (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    32 5y5s:7 (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    33 5y5s:7 (1.9) BS05 BCL ? GO:0005515 ... D2Z0P2 29618814
    34 5y5s:7 (1.9) BS06 UQ8 ? GO:0005515 ... D2Z0P2 29618814
    35 5y5s:7 (1.9) BS07 CRT ? GO:0005515 ... D2Z0P2 29618814
    36 5y5s:7 (1.9) BS08 BCL ? GO:0005515 ... D2Z0P2 29618814
    37 5y5s:7 (1.9) BS09 CRT ? GO:0005515 ... D2Z0P2 29618814
    38 5y5s:8 (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    39 5y5s:8 (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    40 5y5s:8 (1.9) BS03 CRT ? GO:0005515 ... D2Z0P1 29618814
    41 5y5s:9 (1.9) BS01 CA ? GO:0005515 ... D2Z0P2 29618814
    42 5y5s:9 (1.9) BS02 CRT ? GO:0005515 ... D2Z0P2 29618814
    43 5y5s:9 (1.9) BS03 CRT ? GO:0005515 ... D2Z0P2 29618814
    44 5y5s:9 (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    45 5y5s:9 (1.9) BS05 CRT ? GO:0005515 ... D2Z0P2 29618814
    46 5y5s:9 (1.9) BS06 BCL ? GO:0005515 ... D2Z0P2 29618814
    47 5y5s:A (1.9) BS01 BCL ? GO:0005515 ... D2Z0P2 29618814
    48 5y5s:A (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    49 5y5s:A (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    50 5y5s:A (1.9) BS04 CRT ? GO:0005515 ... D2Z0P2 29618814
    51 5y5s:A (1.9) BS05 CRT ? GO:0005515 ... D2Z0P2 29618814
    52 5y5s:A (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    53 5y5s:B (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    54 5y5s:B (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    55 5y5s:B (1.9) BS03 CRT ? GO:0005515 ... D2Z0P1 29618814
    56 5y5s:C (1.9) BS01 HEC ? GO:0005506 ... D2Z0P5 29618814
    57 5y5s:C (1.9) BS02 HEC ? GO:0005506 ... D2Z0P5 29618814
    58 5y5s:C (1.9) BS03 HEC ? GO:0005506 ... D2Z0P5 29618814
    59 5y5s:C (1.9) BS04 HEC ? GO:0005506 ... D2Z0P5 29618814
    60 5y5s:C (1.9) BS05 MG ? GO:0005506 ... D2Z0P5 29618814
    61 5y5s:D (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    62 5y5s:D (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    63 5y5s:D (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    64 5y5s:D (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    65 5y5s:D (1.9) BS05 CRT ? GO:0005515 ... D2Z0P2 29618814
    66 5y5s:D (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    67 5y5s:E (1.9) BS01 CRT ? GO:0005515 ... D2Z0P1 29618814
    68 5y5s:E (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    69 5y5s:E (1.9) BS03 BCL ? GO:0005515 ... D2Z0P1 29618814
    70 5y5s:F (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    71 5y5s:F (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    72 5y5s:F (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    73 5y5s:F (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    74 5y5s:F (1.9) BS05 CRT ? GO:0005515 ... D2Z0P2 29618814
    75 5y5s:F (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    76 5y5s:G (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    77 5y5s:G (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    78 5y5s:G (1.9) BS03 CRT ? GO:0005515 ... D2Z0P1 29618814
    79 5y5s:I (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    80 5y5s:I (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    81 5y5s:I (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    82 5y5s:I (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    83 5y5s:I (1.9) BS05 CRT ? GO:0005515 ... D2Z0P2 29618814
    84 5y5s:I (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    85 5y5s:J (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    86 5y5s:J (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    87 5y5s:J (1.9) BS03 CRT ? GO:0005515 ... D2Z0P1 29618814
    88 5y5s:K (1.9) BS01 CA ? GO:0005515 ... D2Z0P2 29618814
    89 5y5s:K (1.9) BS02 BCL ? GO:0005515 ... D2Z0P2 29618814
    90 5y5s:K (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    91 5y5s:K (1.9) BS04 CRT ? GO:0005515 ... D2Z0P2 29618814
    92 5y5s:K (1.9) BS05 CRT ? GO:0005515 ... D2Z0P2 29618814
    93 5y5s:L (1.9) BS01 BCL ? GO:0005515 ... D2Z0P3 29618814
    94 5y5s:L (1.9) BS02 BPH ? GO:0005515 ... D2Z0P3 29618814
    95 5y5s:L (1.9) BS03 UQ8 ? GO:0005515 ... D2Z0P3 29618814
    96 5y5s:L (1.9) BS04 UQ8 ? GO:0005515 ... D2Z0P3 29618814
    97 5y5s:L (1.9) BS05 UQ8 ? GO:0005515 ... D2Z0P3 29618814
    98 5y5s:L (1.9) BS06 FE ? GO:0005515 ... D2Z0P3 29618814
    99 5y5s:L (1.9) BS07 BCL ? GO:0005515 ... D2Z0P3 29618814
    100 5y5s:L (1.9) BS08 BCL ? GO:0005515 ... D2Z0P3 29618814
    101 5y5s:L (1.9) BS09 BPH ? GO:0005515 ... D2Z0P3 29618814
    102 5y5s:L (1.9) BS10 MQ8 ? GO:0005515 ... D2Z0P3 29618814
    103 5y5s:L (1.9) BS11 UQ8 ? GO:0005515 ... D2Z0P3 29618814
    104 5y5s:M (1.9) BS01 BPH ? GO:0005515 ... A8ASG6 29618814
    105 5y5s:M (1.9) BS02 FE ? GO:0005515 ... A8ASG6 29618814
    106 5y5s:M (1.9) BS03 BCL ? GO:0005515 ... A8ASG6 29618814
    107 5y5s:M (1.9) BS04 BCL ? GO:0005515 ... A8ASG6 29618814
    108 5y5s:M (1.9) BS05 BCL ? GO:0005515 ... A8ASG6 29618814
    109 5y5s:M (1.9) BS06 BPH ? GO:0005515 ... A8ASG6 29618814
    110 5y5s:M (1.9) BS07 MQ8 ? GO:0005515 ... A8ASG6 29618814
    111 5y5s:M (1.9) BS08 CRT ? GO:0005515 ... A8ASG6 29618814
    112 5y5s:M (1.9) BS09 UQ8 ? GO:0005515 ... A8ASG6 29618814
    113 5y5s:N (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    114 5y5s:N (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    115 5y5s:N (1.9) BS03 CRT ? GO:0005515 ... D2Z0P1 29618814
    116 5y5s:O (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    117 5y5s:O (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    118 5y5s:O (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    119 5y5s:O (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    120 5y5s:O (1.9) BS05 CRT ? GO:0005515 ... D2Z0P2 29618814
    121 5y5s:P (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    122 5y5s:P (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    123 5y5s:P (1.9) BS03 CRT ? GO:0005515 ... D2Z0P1 29618814
    124 5y5s:Q (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    125 5y5s:Q (1.9) BS02 CRT ? GO:0005515 ... D2Z0P2 29618814
    126 5y5s:Q (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    127 5y5s:Q (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    128 5y5s:Q (1.9) BS05 BCL ? GO:0005515 ... D2Z0P2 29618814
    129 5y5s:Q (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    130 5y5s:R (1.9) BS01 CRT ? GO:0005515 ... D2Z0P1 29618814
    131 5y5s:R (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    132 5y5s:R (1.9) BS03 BCL ? GO:0005515 ... D2Z0P1 29618814
    133 5y5s:S (1.9) BS01 UQ8 ? GO:0005515 ... D2Z0P2 29618814
    134 5y5s:S (1.9) BS02 CRT ? GO:0005515 ... D2Z0P2 29618814
    135 5y5s:S (1.9) BS03 CRT ? GO:0005515 ... D2Z0P2 29618814
    136 5y5s:S (1.9) BS04 CA ? GO:0005515 ... D2Z0P2 29618814
    137 5y5s:S (1.9) BS05 BCL ? GO:0005515 ... D2Z0P2 29618814
    138 5y5s:S (1.9) BS06 BCL ? GO:0005515 ... D2Z0P2 29618814
    139 5y5s:S (1.9) BS07 CRT ? GO:0005515 ... D2Z0P2 29618814
    140 5y5s:T (1.9) BS01 CRT ? GO:0005515 ... D2Z0P1 29618814
    141 5y5s:T (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    142 5y5s:T (1.9) BS03 BCL ? GO:0005515 ... D2Z0P1 29618814
    143 5y5s:U (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    144 5y5s:U (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    145 5y5s:U (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    146 5y5s:U (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    147 5y5s:U (1.9) BS05 CRT ? GO:0005515 ... D2Z0P2 29618814
    148 5y5s:U (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    149 5y5s:V (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    150 5y5s:V (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    151 5y5s:V (1.9) BS03 CRT ? GO:0005515 ... D2Z0P1 29618814
    152 5y5s:W (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    153 5y5s:W (1.9) BS02 CRT ? GO:0005515 ... D2Z0P2 29618814
    154 5y5s:W (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    155 5y5s:W (1.9) BS04 BCL ? GO:0005515 ... D2Z0P2 29618814
    156 5y5s:W (1.9) BS05 BCL ? GO:0005515 ... D2Z0P2 29618814
    157 5y5s:W (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    158 5y5s:X (1.9) BS01 CRT ? GO:0005515 ... D2Z0P1 29618814
    159 5y5s:X (1.9) BS02 BCL ? GO:0005515 ... D2Z0P1 29618814
    160 5y5s:X (1.9) BS03 BCL ? GO:0005515 ... D2Z0P1 29618814
    161 5y5s:Y (1.9) BS01 CRT ? GO:0005515 ... D2Z0P2 29618814
    162 5y5s:Y (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    163 5y5s:Y (1.9) BS03 BCL ? GO:0005515 ... D2Z0P2 29618814
    164 5y5s:Y (1.9) BS04 CRT ? GO:0005515 ... D2Z0P2 29618814
    165 5y5s:Y (1.9) BS05 BCL ? GO:0005515 ... D2Z0P2 29618814
    166 5y5s:Y (1.9) BS06 CRT ? GO:0005515 ... D2Z0P2 29618814
    167 5y5s:Z (1.9) BS01 BCL ? GO:0005515 ... D2Z0P1 29618814
    168 5y5s:Z (1.9) BS02 CRT ? GO:0005515 ... D2Z0P1 29618814
    169 5y5s:Z (1.9) BS03 BCL ? GO:0005515 ... D2Z0P1 29618814
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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