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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5vdh:A (2.85) BS01 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    2 5vdh:A (2.85) BS02 GLY ? GO:0004888 ... O75311 28479061
    3 5vdh:A (2.85) BS03 IVM ? GO:0004888 ... O75311 28479061
    4 5vdh:A (2.85) BS04 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    5 5vdh:A (2.85) BS05 GLY ? GO:0004888 ... O75311 28479061
    6 5vdh:A (2.85) BS06 IVM ? GO:0004888 ... O75311 28479061
    7 5vdh:B (2.85) BS01 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    8 5vdh:B (2.85) BS02 GLY ? GO:0004888 ... O75311 28479061
    9 5vdh:B (2.85) BS03 IVM ? GO:0004888 ... O75311 28479061
    10 5vdh:B (2.85) BS04 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    11 5vdh:B (2.85) BS05 GLY ? GO:0004888 ... O75311 28479061
    12 5vdh:B (2.85) BS06 IVM ? GO:0004888 ... O75311 28479061
    13 5vdh:B (2.85) BS07 ZN ? GO:0004888 ... O75311 28479061
    14 5vdh:C (2.85) BS01 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    15 5vdh:C (2.85) BS02 GLY ? GO:0004888 ... O75311 28479061
    16 5vdh:C (2.85) BS03 IVM ? GO:0004888 ... O75311 28479061
    17 5vdh:C (2.85) BS04 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    18 5vdh:C (2.85) BS05 GLY ? GO:0004888 ... O75311 28479061
    19 5vdh:C (2.85) BS06 IVM ? GO:0004888 ... O75311 28479061
    20 5vdh:C (2.85) BS07 ZN ? GO:0004888 ... O75311 28479061
    21 5vdh:D (2.85) BS01 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    22 5vdh:D (2.85) BS02 GLY ? GO:0004888 ... O75311 28479061
    23 5vdh:D (2.85) BS03 IVM ? GO:0004888 ... O75311 28479061
    24 5vdh:D (2.85) BS04 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    25 5vdh:D (2.85) BS05 GLY ? GO:0004888 ... O75311 28479061
    26 5vdh:D (2.85) BS06 IVM ? GO:0004888 ... O75311 28479061
    27 5vdh:D (2.85) BS07 ZN ? GO:0004888 ... O75311 28479061
    28 5vdh:E (2.85) BS01 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    29 5vdh:E (2.85) BS02 GLY ? GO:0004888 ... O75311 28479061
    30 5vdh:E (2.85) BS03 IVM ? GO:0004888 ... O75311 28479061
    31 5vdh:E (2.85) BS04 7C6 ? GO:0004888 ... O75311 28479061 BindingDB: EC50=50nM, Kd=11nM
    32 5vdh:E (2.85) BS05 GLY ? GO:0004888 ... O75311 28479061
    33 5vdh:E (2.85) BS06 IVM ? GO:0004888 ... O75311 28479061
    34 5vdh:E (2.85) BS07 ZN ? GO:0004888 ... O75311 28479061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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