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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5jbh:1 (5.34) BS01 rna ? GO:0001731 ... Q57902 27819266
    2 5jbh:1 (5.34) BS02 rna ? GO:0001731 ... Q57902 27819266
    3 5jbh:3 (5.34) BS01 rna ? GO:0001682 ... P62008 27819266
    4 5jbh:6 (5.34) BS01 rna ? GO:0003723 ... Q9V138 27819266
    5 5jbh:7 (5.34) BS01 rna 3.6.5.3 GO:0000049 ... Q980A5 27819266
    6 5jbh:7 (5.34) BS02 MET 3.6.5.3 GO:0000049 ... Q980A5 27819266
    7 5jbh:7 (5.34) BS03 MG 3.6.5.3 GO:0000049 ... Q980A5 27819266
    8 5jbh:7 (5.34) BS04 GNP 3.6.5.3 GO:0000049 ... Q980A5 27819266
    9 5jbh:9 (5.34) BS01 rna ? GO:0003676 ... Q97Z79 27819266
    10 5jbh:A (5.34) BS01 rna ? GO:0003735 ... Q8TZE1 27819266
    11 5jbh:B (5.34) BS01 rna ? GO:0000028 ... Q8U0F0 27819266
    12 5jbh:D (5.34) BS01 rna ? GO:0003723 ... P61992 27819266
    13 5jbh:E (5.34) BS01 rna ? GO:0003723 ... Q8U011 27819266
    14 5jbh:F (5.34) BS01 rna ? GO:0003723 ... Q8U017 27819266
    15 5jbh:G (5.34) BS01 rna ? GO:0003735 ... Q8U3H8 27819266
    16 5jbh:H (5.34) BS01 rna ? GO:0000028 ... Q8U0M8 27819266
    17 5jbh:I (5.34) BS01 rna ? GO:0003735 ... Q8U014 27819266
    18 5jbh:J (5.34) BS01 rna ? GO:0000462 ... Q8U1Y5 27819266
    19 5jbh:K (5.34) BS01 rna ? GO:0000462 ... Q8U0E7 27819266
    20 5jbh:L (5.34) BS01 rna ? GO:0000049 ... P61885 27819266
    21 5jbh:M (5.34) BS01 rna ? GO:0003735 ... Q8U0E3 27819266
    22 5jbh:N (5.34) BS01 rna ? GO:0003735 ... P61994 27819266
    23 5jbh:O (5.34) BS01 rna ? GO:0003676 ... Q8U0E2 27819266
    24 5jbh:P (5.34) BS01 rna ? GO:0003723 ... Q8U013 27819266
    25 5jbh:Q (5.34) BS01 rna ? GO:0003735 ... Q8TZD9 27819266
    26 5jbh:R (5.34) BS01 rna ? GO:0003735 ... Q8U008 27819266
    27 5jbh:S (5.34) BS01 rna ? GO:0003735 ... Q8U0U1 27819266
    28 5jbh:T (5.34) BS01 rna ? GO:0000028 ... Q8U002 27819266
    29 5jbh:U (5.34) BS01 rna ? GO:0000028 ... Q9V0G8 27819266
    30 5jbh:V (5.34) BS01 rna ? GO:0003735 ... Q8U442 27819266
    31 5jbh:W (5.34) BS01 rna ? GO:0000028 ... Q8U474 27819266
    32 5jbh:X (5.34) BS01 rna ? GO:0000028 ... Q8U159 27819266
    33 5jbh:Y (5.34) BS01 rna ? GO:0003735 ... Q8U443 27819266
    34 5jbh:Z (5.34) BS01 rna ? GO:0003676 ... Q8U004 27819266
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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