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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5gak:C (3.88) BS01 rna ? GO:0002181 ... P0CX27 26715760
    2 5gak:D (3.88) BS01 rna ? GO:0002181 ... P0CX25 26715760
    3 5gak:E (3.88) BS01 rna ? GO:0002181 ... P0CX45 26715760
    4 5gak:F (3.88) BS01 rna ? GO:0000027 ... P14126 26715760
    5 5gak:G (3.88) BS01 rna ? GO:0002181 ... P10664 26715760
    6 5gak:G (3.88) BS02 rna ? GO:0002181 ... P10664 26715760
    7 5gak:H (3.88) BS01 rna ? GO:0000027 ... P26321 26715760
    8 5gak:H (3.88) BS02 rna ? GO:0000027 ... P26321 26715760
    9 5gak:I (3.88) BS01 rna ? GO:0000027 ... Q02326 26715760
    10 5gak:J (3.88) BS01 rna ? GO:0000463 ... P05737 26715760
    11 5gak:J (3.88) BS02 rna ? GO:0000463 ... P05737 26715760
    12 5gak:K (3.88) BS01 rna ? GO:0000470 ... P17076 26715760
    13 5gak:K (3.88) BS02 rna ? GO:0000470 ... P17076 26715760
    14 5gak:L (3.88) BS01 rna ? GO:0002181 ... P05738 26715760
    15 5gak:M (3.88) BS01 rna ? GO:0000027 ... P0C0W9 26715760
    16 5gak:M (3.88) BS02 rna ? GO:0000027 ... P0C0W9 26715760
    17 5gak:M (3.88) BS03 rna ? GO:0000027 ... P0C0W9 26715760
    18 5gak:N (3.88) BS01 rna ? GO:0002181 ... Q12690 26715760
    19 5gak:N (3.88) BS02 rna ? GO:0002181 ... Q12690 26715760
    20 5gak:O (3.88) BS01 rna ? GO:0000027 ... P36105 26715760
    21 5gak:P (3.88) BS01 rna ? GO:0002181 ... P05748 26715760
    22 5gak:P (3.88) BS02 rna ? GO:0002181 ... P05748 26715760
    23 5gak:Q (3.88) BS01 rna ? GO:0000470 ... P26784 26715760
    24 5gak:R (3.88) BS01 rna ? GO:0000448 ... P05740 26715760
    25 5gak:R (3.88) BS02 rna ? GO:0000448 ... P05740 26715760
    26 5gak:S (3.88) BS01 rna ? GO:0002181 ... P0CX49 26715760
    27 5gak:T (3.88) BS01 rna ? GO:0002181 ... P0CX82 26715760
    28 5gak:U (3.88) BS01 rna ? GO:0002181 ... P0CX23 26715760
    29 5gak:U (3.88) BS02 rna ? GO:0002181 ... P0CX23 26715760
    30 5gak:V (3.88) BS01 rna ? GO:0002181 ... Q02753 26715760
    31 5gak:V (3.88) BS02 rna ? GO:0002181 ... Q02753 26715760
    32 5gak:W (3.88) BS01 rna ? GO:0002181 ... P05749 26715760
    33 5gak:X (3.88) BS01 rna ? GO:0002181 ... P0CX41 26715760
    34 5gak:Y (3.88) BS01 rna ? GO:0002181 ... P04449 26715760
    35 5gak:Z (3.88) BS01 rna ? GO:0000027 ... P04456 26715760
    36 5gak:Z (3.88) BS02 rna ? GO:0000027 ... P04456 26715760
    37 5gak:a (3.88) BS01 rna ? GO:0002181 ... P05743 26715760
    38 5gak:a (3.88) BS02 rna ? GO:0002181 ... P05743 26715760
    39 5gak:b (3.88) BS01 rna ? GO:0002181 ... P0C2H6 26715760
    40 5gak:c (3.88) BS01 rna ? GO:0002181 ... P02406 26715760
    41 5gak:d (3.88) BS01 rna ? GO:0002181 ... P05747 26715760
    42 5gak:e (3.88) BS01 rna ? GO:0002181 ... P14120 26715760
    43 5gak:f (3.88) BS01 rna ? GO:0002181 ... P0C2H8 26715760
    44 5gak:g (3.88) BS01 rna ? GO:0002181 ... P38061 26715760
    45 5gak:h (3.88) BS01 rna ? GO:0000027 ... P05744 26715760
    46 5gak:i (3.88) BS01 rna ? GO:0002181 ... P87262 26715760
    47 5gak:j (3.88) BS01 rna ? GO:0000463 ... P0CX84 26715760
    48 5gak:j (3.88) BS02 rna ? GO:0000463 ... P0CX84 26715760
    49 5gak:k (3.88) BS01 rna ? GO:0002181 ... P05745 26715760
    50 5gak:l (3.88) BS01 rna ? GO:0000448 ... P49166 26715760
    51 5gak:l (3.88) BS02 rna ? GO:0000448 ... P49166 26715760
    52 5gak:m (3.88) BS01 rna ? GO:0002181 ... P49167 26715760
    53 5gak:n (3.88) BS01 rna ? GO:0002181 ... P04650 26715760
    54 5gak:n (3.88) BS02 rna ? GO:0002181 ... P04650 26715760
    55 5gak:o (3.88) BS01 rna ? GO:0000027 ... P0CH08 26715760
    56 5gak:q (3.88) BS01 rna ? GO:0002182 ... P23301 26715760
    57 5gak:q (3.88) BS02 rna ? GO:0002182 ... P23301 26715760
    58 5gak:r (3.88) BS01 rna N/A N/A N/A 26715760
    59 5gak:s (3.88) BS01 rna ? GO:0000027 ... P41805 26715760
    60 5gak:s (3.88) BS02 rna ? GO:0000027 ... P41805 26715760
    61 5gak:s (3.88) BS03 rna ? GO:0000027 ... P41805 26715760
    62 5gak:s (3.88) BS04 rna ? GO:0000027 ... P41805 26715760
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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