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BioLiP
Download all results in tab-seperated text for 289 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5fcj:C0 (3.1) BS01 rna ? N/A Q08745 26906928
    2 5fcj:C1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 26906928
    3 5fcj:C2 (3.1) BS01 rna ? GO:0000028 ... P48589 26906928
    4 5fcj:C3 (3.1) BS01 rna ? GO:0000462 ... P05756 26906928
    5 5fcj:C3 (3.1) BS02 rna ? GO:0000462 ... P05756 26906928
    6 5fcj:C3 (3.1) BS03 OHX ? GO:0000462 ... P05756 26906928
    7 5fcj:C3 (3.1) BS04 OHX ? GO:0000462 ... P05756 26906928
    8 5fcj:C4 (3.1) BS01 rna ? GO:0000028 ... P06367 26906928
    9 5fcj:C5 (3.1) BS01 rna ? GO:0000028 ... Q01855 26906928
    10 5fcj:C5 (3.1) BS02 rna ? GO:0000028 ... Q01855 26906928
    11 5fcj:C5 (3.1) BS03 OHX ? GO:0000028 ... Q01855 26906928
    12 5fcj:C6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 26906928
    13 5fcj:C7 (3.1) BS01 rna ? GO:0000028 ... P02407 26906928
    14 5fcj:C8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 26906928
    15 5fcj:C8 (3.1) BS02 MG ? GO:0000054 ... P0CX55 26906928
    16 5fcj:C9 (3.1) BS01 rna ? GO:0000028 ... P07280 26906928
    17 5fcj:D0 (3.1) BS01 rna ? GO:0000462 ... P38701 26906928
    18 5fcj:D2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 26906928
    19 5fcj:D3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 26906928
    20 5fcj:D4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 26906928
    21 5fcj:D5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 26906928
    22 5fcj:D6 (3.1) BS01 rna ? GO:0003735 ... P39939 26906928
    23 5fcj:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 26906928
    24 5fcj:D7 (3.1) BS01 rna ? GO:0000028 ... P35997 26906928
    25 5fcj:D8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 26906928
    26 5fcj:D9 (3.1) BS01 rna ? GO:0002181 ... P41057 26906928
    27 5fcj:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 26906928
    28 5fcj:D9 (3.1) BS03 OHX ? GO:0002181 ... P41057 26906928
    29 5fcj:E0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 26906928
    30 5fcj:E1 (3.1) BS01 rna ? GO:0003735 ... P05759 26906928
    31 5fcj:E1 (3.1) BS02 ZN ? GO:0003735 ... P05759 26906928
    32 5fcj:L2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 26906928
    33 5fcj:L2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 26906928
    34 5fcj:L2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 26906928
    35 5fcj:L2 (3.1) BS04 MG ? GO:0002181 ... P0CX45 26906928
    36 5fcj:L3 (3.1) BS01 rna ? GO:0000027 ... P14126 26906928
    37 5fcj:L3 (3.1) BS02 OHX ? GO:0000027 ... P14126 26906928
    38 5fcj:L4 (3.1) BS01 rna ? GO:0002181 ... P10664 26906928
    39 5fcj:L4 (3.1) BS02 rna ? GO:0002181 ... P10664 26906928
    40 5fcj:L4 (3.1) BS03 OHX ? GO:0002181 ... P10664 26906928
    41 5fcj:L5 (3.1) BS01 rna ? GO:0000027 ... P26321 26906928
    42 5fcj:L5 (3.1) BS02 rna ? GO:0000027 ... P26321 26906928
    43 5fcj:L6 (3.1) BS01 rna ? GO:0000027 ... Q02326 26906928
    44 5fcj:L7 (3.1) BS01 rna ? GO:0000463 ... P05737 26906928
    45 5fcj:L7 (3.1) BS02 rna ? GO:0000463 ... P05737 26906928
    46 5fcj:L7 (3.1) BS03 MG ? GO:0000463 ... P05737 26906928
    47 5fcj:L7 (3.1) BS04 OHX ? GO:0000463 ... P05737 26906928
    48 5fcj:L8 (3.1) BS01 rna ? GO:0000470 ... P17076 26906928
    49 5fcj:L8 (3.1) BS02 rna ? GO:0000470 ... P17076 26906928
    50 5fcj:L9 (3.1) BS01 rna ? GO:0002181 ... P05738 26906928
    51 5fcj:M0 (3.1) BS01 rna ? GO:0000027 ... P41805 26906928
    52 5fcj:M0 (3.1) BS02 rna ? GO:0000027 ... P41805 26906928
    53 5fcj:M1 (3.1) BS01 rna ? GO:0000027 ... P0C0W9 26906928
    54 5fcj:M1 (3.1) BS02 rna ? GO:0000027 ... P0C0W9 26906928
    55 5fcj:M3 (3.1) BS01 rna ? GO:0002181 ... Q12690 26906928
    56 5fcj:M3 (3.1) BS02 rna ? GO:0002181 ... Q12690 26906928
    57 5fcj:M4 (3.1) BS01 rna ? GO:0000027 ... P36105 26906928
    58 5fcj:M5 (3.1) BS01 rna ? GO:0002181 ... P05748 26906928
    59 5fcj:M5 (3.1) BS02 rna ? GO:0002181 ... P05748 26906928
    60 5fcj:M5 (3.1) BS03 OHX ? GO:0002181 ... P05748 26906928
    61 5fcj:M6 (3.1) BS01 rna ? GO:0000470 ... P26784 26906928
    62 5fcj:M7 (3.1) BS01 rna ? GO:0000448 ... P05740 26906928
    63 5fcj:M7 (3.1) BS02 rna ? GO:0000448 ... P05740 26906928
    64 5fcj:M7 (3.1) BS03 MG ? GO:0000448 ... P05740 26906928
    65 5fcj:M7 (3.1) BS04 MG ? GO:0000448 ... P05740 26906928
    66 5fcj:M8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 26906928
    67 5fcj:M8 (3.1) BS02 MG ? GO:0002181 ... P0CX49 26906928
    68 5fcj:M9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 26906928
    69 5fcj:M9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 26906928
    70 5fcj:M9 (3.1) BS03 OHX ? GO:0002181 ... P0CX82 26906928
    71 5fcj:N0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 26906928
    72 5fcj:N0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 26906928
    73 5fcj:N0 (3.1) BS03 MG ? GO:0002181 ... P0CX23 26906928
    74 5fcj:N1 (3.1) BS01 rna ? GO:0002181 ... Q02753 26906928
    75 5fcj:N1 (3.1) BS02 rna ? GO:0002181 ... Q02753 26906928
    76 5fcj:N1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 26906928
    77 5fcj:N2 (3.1) BS01 rna ? GO:0002181 ... P05749 26906928
    78 5fcj:N3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 26906928
    79 5fcj:N3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 26906928
    80 5fcj:N4 (3.1) BS01 rna ? GO:0002181 ... P04449 26906928
    81 5fcj:N4 (3.1) BS02 rna ? GO:0002181 ... P04449 26906928
    82 5fcj:N5 (3.1) BS01 rna ? GO:0000027 ... P04456 26906928
    83 5fcj:N5 (3.1) BS02 rna ? GO:0000027 ... P04456 26906928
    84 5fcj:N5 (3.1) BS03 MG ? GO:0000027 ... P04456 26906928
    85 5fcj:N6 (3.1) BS01 rna ? GO:0002181 ... P05743 26906928
    86 5fcj:N6 (3.1) BS02 rna ? GO:0002181 ... P05743 26906928
    87 5fcj:N7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 26906928
    88 5fcj:N8 (3.1) BS01 rna ? GO:0002181 ... P02406 26906928
    89 5fcj:N8 (3.1) BS02 MG ? GO:0002181 ... P02406 26906928
    90 5fcj:N8 (3.1) BS03 MG ? GO:0002181 ... P02406 26906928
    91 5fcj:N8 (3.1) BS04 MG ? GO:0002181 ... P02406 26906928
    92 5fcj:N9 (3.1) BS01 rna ? GO:0002181 ... P05747 26906928
    93 5fcj:N9 (3.1) BS02 OHX ? GO:0002181 ... P05747 26906928
    94 5fcj:O0 (3.1) BS01 rna ? GO:0002181 ... P14120 26906928
    95 5fcj:O1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 26906928
    96 5fcj:O2 (3.1) BS01 rna ? GO:0002181 ... P38061 26906928
    97 5fcj:O3 (3.1) BS01 rna ? GO:0000027 ... P05744 26906928
    98 5fcj:O3 (3.1) BS02 OHX ? GO:0000027 ... P05744 26906928
    99 5fcj:O4 (3.1) BS01 rna ? GO:0002181 ... P87262 26906928
    100 5fcj:O4 (3.1) BS02 MG ? GO:0002181 ... P87262 26906928
    101 5fcj:O5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 26906928
    102 5fcj:O5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 26906928
    103 5fcj:O6 (3.1) BS01 rna ? GO:0002181 ... P05745 26906928
    104 5fcj:O7 (3.1) BS01 rna ? GO:0000448 ... P49166 26906928
    105 5fcj:O7 (3.1) BS02 rna ? GO:0000448 ... P49166 26906928
    106 5fcj:O7 (3.1) BS03 OHX ? GO:0000448 ... P49166 26906928
    107 5fcj:O7 (3.1) BS04 ZN ? GO:0000448 ... P49166 26906928
    108 5fcj:O7 (3.1) BS05 OHX ? GO:0000448 ... P49166 26906928
    109 5fcj:O7 (3.1) BS06 OHX ? GO:0000448 ... P49166 26906928
    110 5fcj:O8 (3.1) BS01 rna ? GO:0002181 ... P49167 26906928
    111 5fcj:O9 (3.1) BS01 rna ? GO:0002181 ... P04650 26906928
    112 5fcj:O9 (3.1) BS02 rna ? GO:0002181 ... P04650 26906928
    113 5fcj:O9 (3.1) BS03 MG ? GO:0002181 ... P04650 26906928
    114 5fcj:O9 (3.1) BS04 OHX ? GO:0002181 ... P04650 26906928
    115 5fcj:Q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 26906928
    116 5fcj:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 26906928
    117 5fcj:Q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 26906928
    118 5fcj:Q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 26906928
    119 5fcj:Q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 26906928
    120 5fcj:Q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 26906928
    121 5fcj:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 26906928
    122 5fcj:S0 (3.1) BS01 rna ? GO:0000028 ... P32905 26906928
    123 5fcj:S1 (3.1) BS01 rna ? GO:0000462 ... P33442 26906928
    124 5fcj:S1 (3.1) BS02 OHX ? GO:0000462 ... P33442 26906928
    125 5fcj:S2 (3.1) BS01 rna ? GO:0000054 ... P25443 26906928
    126 5fcj:S3 (3.1) BS01 rna ? GO:0000054 ... P05750 26906928
    127 5fcj:S4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 26906928
    128 5fcj:S5 (3.1) BS01 rna ? GO:0000028 ... P26783 26906928
    129 5fcj:S6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 26906928
    130 5fcj:S7 (3.1) BS01 rna ? GO:0002181 ... P26786 26906928
    131 5fcj:S8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 26906928
    132 5fcj:S8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 26906928
    133 5fcj:S8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 26906928
    134 5fcj:S9 (3.1) BS01 rna ? GO:0000462 ... O13516 26906928
    135 5fcj:SM (3.1) BS01 rna ? N/A P39015 26906928
    136 5fcj:SM (3.1) BS02 rna ? N/A P39015 26906928
    137 5fcj:SR (3.1) BS01 rna ? GO:0001965 ... P38011 26906928
    138 5fcj:SR (3.1) BS02 OHX ? GO:0001965 ... P38011 26906928
    139 5fcj:c0 (3.1) BS01 rna ? N/A Q08745 26906928
    140 5fcj:c1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 26906928
    141 5fcj:c2 (3.1) BS01 rna ? GO:0000028 ... P48589 26906928
    142 5fcj:c3 (3.1) BS01 rna ? GO:0000462 ... P05756 26906928
    143 5fcj:c3 (3.1) BS02 rna ? GO:0000462 ... P05756 26906928
    144 5fcj:c3 (3.1) BS03 OHX ? GO:0000462 ... P05756 26906928
    145 5fcj:c4 (3.1) BS01 rna ? GO:0000028 ... P06367 26906928
    146 5fcj:c5 (3.1) BS01 rna ? GO:0000028 ... Q01855 26906928
    147 5fcj:c5 (3.1) BS02 OHX ? GO:0000028 ... Q01855 26906928
    148 5fcj:c6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 26906928
    149 5fcj:c7 (3.1) BS01 rna ? GO:0000028 ... P02407 26906928
    150 5fcj:c8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 26906928
    151 5fcj:c8 (3.1) BS02 MG ? GO:0000054 ... P0CX55 26906928
    152 5fcj:c9 (3.1) BS01 rna ? GO:0000028 ... P07280 26906928
    153 5fcj:c9 (3.1) BS02 MG ? GO:0000028 ... P07280 26906928
    154 5fcj:d0 (3.1) BS01 rna ? GO:0000462 ... P38701 26906928
    155 5fcj:d2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 26906928
    156 5fcj:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 26906928
    157 5fcj:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 26906928
    158 5fcj:d5 (3.1) BS01 rna ? GO:0002181 ... Q3E792 26906928
    159 5fcj:d6 (3.1) BS01 rna ? GO:0003735 ... P39939 26906928
    160 5fcj:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 26906928
    161 5fcj:d7 (3.1) BS01 rna ? GO:0000028 ... P35997 26906928
    162 5fcj:d7 (3.1) BS02 ZN ? GO:0000028 ... P35997 26906928
    163 5fcj:d8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 26906928
    164 5fcj:d9 (3.1) BS01 rna ? GO:0002181 ... P41057 26906928
    165 5fcj:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 26906928
    166 5fcj:e0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 26906928
    167 5fcj:e1 (3.1) BS01 rna ? GO:0003735 ... P05759 26906928
    168 5fcj:l2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 26906928
    169 5fcj:l2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 26906928
    170 5fcj:l2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 26906928
    171 5fcj:l2 (3.1) BS04 MG ? GO:0002181 ... P0CX45 26906928
    172 5fcj:l3 (3.1) BS01 rna ? GO:0000027 ... P14126 26906928
    173 5fcj:l3 (3.1) BS02 MG ? GO:0000027 ... P14126 26906928
    174 5fcj:l3 (3.1) BS03 MG ? GO:0000027 ... P14126 26906928
    175 5fcj:l3 (3.1) BS04 MG ? GO:0000027 ... P14126 26906928
    176 5fcj:l3 (3.1) BS05 MG ? GO:0000027 ... P14126 26906928
    177 5fcj:l3 (3.1) BS06 MG ? GO:0000027 ... P14126 26906928
    178 5fcj:l3 (3.1) BS07 OHX ? GO:0000027 ... P14126 26906928
    179 5fcj:l4 (3.1) BS01 rna ? GO:0002181 ... P10664 26906928
    180 5fcj:l4 (3.1) BS02 rna ? GO:0002181 ... P10664 26906928
    181 5fcj:l4 (3.1) BS03 OHX ? GO:0002181 ... P10664 26906928
    182 5fcj:l4 (3.1) BS04 OHX ? GO:0002181 ... P10664 26906928
    183 5fcj:l5 (3.1) BS01 rna ? GO:0000027 ... P26321 26906928
    184 5fcj:l5 (3.1) BS02 rna ? GO:0000027 ... P26321 26906928
    185 5fcj:l5 (3.1) BS03 OHX ? GO:0000027 ... P26321 26906928
    186 5fcj:l5 (3.1) BS04 OHX ? GO:0000027 ... P26321 26906928
    187 5fcj:l6 (3.1) BS01 rna ? GO:0000027 ... Q02326 26906928
    188 5fcj:l7 (3.1) BS01 rna ? GO:0000463 ... P05737 26906928
    189 5fcj:l7 (3.1) BS02 rna ? GO:0000463 ... P05737 26906928
    190 5fcj:l8 (3.1) BS01 rna ? GO:0000470 ... P17076 26906928
    191 5fcj:l8 (3.1) BS02 rna ? GO:0000470 ... P17076 26906928
    192 5fcj:l9 (3.1) BS01 rna ? GO:0002181 ... P05738 26906928
    193 5fcj:m0 (3.1) BS01 rna ? GO:0000027 ... P41805 26906928
    194 5fcj:m0 (3.1) BS02 rna ? GO:0000027 ... P41805 26906928
    195 5fcj:m0 (3.1) BS03 OHX ? GO:0000027 ... P41805 26906928
    196 5fcj:m0 (3.1) BS04 OHX ? GO:0000027 ... P41805 26906928
    197 5fcj:m1 (3.1) BS01 rna ? GO:0000027 ... P0C0W9 26906928
    198 5fcj:m1 (3.1) BS02 rna ? GO:0000027 ... P0C0W9 26906928
    199 5fcj:m1 (3.1) BS03 OHX ? GO:0000027 ... P0C0W9 26906928
    200 5fcj:m2 (3.1) BS01 rna N/A N/A N/A 26906928
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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