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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 216 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4wqu:A0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    2 4wqu:A0 (2.8) BS02 rna ? GO:0003735 ... P60493 25594181
    3 4wqu:A0 (2.8) BS03 MG ? GO:0003735 ... P60493 25594181
    4 4wqu:A1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    5 4wqu:A2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    6 4wqu:A3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    7 4wqu:A3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    8 4wqu:A3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    9 4wqu:A4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    10 4wqu:A4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    11 4wqu:A5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    12 4wqu:A5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    13 4wqu:A6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    14 4wqu:A6 (2.8) BS02 MG ? GO:0000049 ... P35871 25594181
    15 4wqu:A6 (2.8) BS03 ZN ? GO:0000049 ... P35871 25594181
    16 4wqu:A7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    17 4wqu:A7 (2.8) BS02 MG ? GO:0003735 ... P80340 25594181
    18 4wqu:A7 (2.8) BS03 MG ? GO:0003735 ... P80340 25594181
    19 4wqu:A7 (2.8) BS04 MG ? GO:0003735 ... P80340 25594181
    20 4wqu:A8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    21 4wqu:A8 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 25594181
    22 4wqu:A9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    23 4wqu:A9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25594181
    24 4wqu:AC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    25 4wqu:AD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    26 4wqu:AD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    27 4wqu:AD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    28 4wqu:AD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    29 4wqu:AD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    30 4wqu:AD (2.8) BS06 MG ? GO:0002181 ... P60405 25594181
    31 4wqu:AD (2.8) BS07 MG ? GO:0002181 ... P60405 25594181
    32 4wqu:AD (2.8) BS08 MG ? GO:0002181 ... P60405 25594181
    33 4wqu:AD (2.8) BS09 MG ? GO:0002181 ... P60405 25594181
    34 4wqu:AD (2.8) BS10 MG ? GO:0002181 ... P60405 25594181
    35 4wqu:AD (2.8) BS11 MG ? GO:0002181 ... P60405 25594181
    36 4wqu:AE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    37 4wqu:AF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    38 4wqu:AF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    39 4wqu:AF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    40 4wqu:AF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    41 4wqu:AF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25594181
    42 4wqu:AF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25594181
    43 4wqu:AF (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 25594181
    44 4wqu:AF (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 25594181
    45 4wqu:AG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    46 4wqu:AG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    47 4wqu:AG (2.8) BS03 rna ? GO:0000049 ... Q5SHQ0 25594181
    48 4wqu:AG (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 25594181
    49 4wqu:AG (2.8) BS05 MG ? GO:0000049 ... Q5SHQ0 25594181
    50 4wqu:AH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    51 4wqu:AH (2.8) BS02 MG N/A GO:0003735 ... N/A 25594181
    52 4wqu:AK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    53 4wqu:AL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    54 4wqu:AN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    55 4wqu:AN (2.8) BS02 MG ? GO:0003729 ... P60488 25594181
    56 4wqu:AO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    57 4wqu:AO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    58 4wqu:AP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    59 4wqu:AP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25594181
    60 4wqu:AP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25594181
    61 4wqu:AP (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 25594181
    62 4wqu:AQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    63 4wqu:AQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    64 4wqu:AQ (2.8) BS03 MG ? GO:0000049 ... P60489 25594181
    65 4wqu:AR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    66 4wqu:AR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25594181
    67 4wqu:AS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    68 4wqu:AS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    69 4wqu:AT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    70 4wqu:AT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    71 4wqu:AU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    72 4wqu:AU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    73 4wqu:AU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    74 4wqu:AU (2.8) BS04 MG ? GO:0000027 ... P60491 25594181
    75 4wqu:AU (2.8) BS05 MG ? GO:0000027 ... P60491 25594181
    76 4wqu:AU (2.8) BS06 MG ? GO:0000027 ... P60491 25594181
    77 4wqu:AV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    78 4wqu:AV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    79 4wqu:AV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    80 4wqu:AV (2.8) BS04 MG ? GO:0003723 ... P60492 25594181
    81 4wqu:AV (2.8) BS05 MG ? GO:0003723 ... P60492 25594181
    82 4wqu:AV (2.8) BS06 MG ? GO:0003723 ... P60492 25594181
    83 4wqu:AV (2.8) BS07 MG ? GO:0003723 ... P60492 25594181
    84 4wqu:AW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    85 4wqu:AW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    86 4wqu:AX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    87 4wqu:AX (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 25594181
    88 4wqu:AY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    89 4wqu:AY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    90 4wqu:AZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    91 4wqu:AZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    92 4wqu:BB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    93 4wqu:BB (2.8) BS02 MG ? GO:0003735 ... P80371 25594181
    94 4wqu:BC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    95 4wqu:BD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    96 4wqu:BD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    97 4wqu:BE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    98 4wqu:BE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    99 4wqu:BF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    100 4wqu:BG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    101 4wqu:BH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    102 4wqu:BI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    103 4wqu:BI (2.8) BS02 rna ? GO:0000049 ... P80374 25594181
    104 4wqu:BJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    105 4wqu:BK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    106 4wqu:BK (2.8) BS02 MG ? GO:0003735 ... P80376 25594181
    107 4wqu:BL (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 25594181
    108 4wqu:BL (2.8) BS02 peptide ? GO:0000049 ... Q5SHN3 25594181
    109 4wqu:BL (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 25594181
    110 4wqu:BM (2.8) BS01 rna ? GO:0000049 ... P80377 25594181
    111 4wqu:BM (2.8) BS02 rna ? GO:0000049 ... P80377 25594181
    112 4wqu:BM (2.8) BS03 MG ? GO:0000049 ... P80377 25594181
    113 4wqu:BN (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    114 4wqu:BN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25594181
    115 4wqu:BN (2.8) BS03 MG N/A GO:0003735 ... N/A 25594181
    116 4wqu:BO (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 25594181
    117 4wqu:BO (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 25594181
    118 4wqu:BP (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 25594181
    119 4wqu:BQ (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    120 4wqu:BR (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 25594181
    121 4wqu:BS (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 25594181
    122 4wqu:BT (2.8) BS01 rna ? GO:0003723 ... P80380 25594181
    123 4wqu:BT (2.8) BS02 MG ? GO:0003723 ... P80380 25594181
    124 4wqu:BZ (2.8) BS01 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    125 4wqu:BZ (2.8) BS02 rna ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    126 4wqu:BZ (2.8) BS03 GDP ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 25594181
    127 4wqu:C0 (2.8) BS01 rna ? GO:0003735 ... P60493 25594181
    128 4wqu:C1 (2.8) BS01 rna ? GO:0003735 ... P60494 25594181
    129 4wqu:C2 (2.8) BS01 rna ? GO:0003735 ... Q5SHP6 25594181
    130 4wqu:C3 (2.8) BS01 rna ? GO:0003735 ... Q5SHQ6 25594181
    131 4wqu:C3 (2.8) BS02 rna ? GO:0003735 ... Q5SHQ6 25594181
    132 4wqu:C3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25594181
    133 4wqu:C4 (2.8) BS01 rna ? GO:0003735 ... Q5SJE1 25594181
    134 4wqu:C4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25594181
    135 4wqu:C5 (2.8) BS01 rna ? GO:0003735 ... P80339 25594181
    136 4wqu:C5 (2.8) BS02 ZN ? GO:0003735 ... P80339 25594181
    137 4wqu:C6 (2.8) BS01 rna ? GO:0000049 ... P35871 25594181
    138 4wqu:C6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25594181
    139 4wqu:C7 (2.8) BS01 rna ? GO:0003735 ... P80340 25594181
    140 4wqu:C8 (2.8) BS01 rna ? GO:0003735 ... Q5SKU1 25594181
    141 4wqu:C9 (2.8) BS01 rna ? GO:0003735 ... Q5SHR2 25594181
    142 4wqu:C9 (2.8) BS02 MG ? GO:0003735 ... Q5SHR2 25594181
    143 4wqu:C9 (2.8) BS03 ZN ? GO:0003735 ... Q5SHR2 25594181
    144 4wqu:CC (2.8) BS01 rna ? GO:0000049 ... Q5SLP7 25594181
    145 4wqu:CD (2.8) BS01 rna ? GO:0002181 ... P60405 25594181
    146 4wqu:CD (2.8) BS02 rna ? GO:0002181 ... P60405 25594181
    147 4wqu:CD (2.8) BS03 MG ? GO:0002181 ... P60405 25594181
    148 4wqu:CD (2.8) BS04 MG ? GO:0002181 ... P60405 25594181
    149 4wqu:CD (2.8) BS05 MG ? GO:0002181 ... P60405 25594181
    150 4wqu:CE (2.8) BS01 rna ? GO:0003735 ... Q5SHN8 25594181
    151 4wqu:CE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25594181
    152 4wqu:CE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25594181
    153 4wqu:CF (2.8) BS01 rna ? GO:0003735 ... Q5SHN9 25594181
    154 4wqu:CF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25594181
    155 4wqu:CF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25594181
    156 4wqu:CF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25594181
    157 4wqu:CG (2.8) BS01 rna ? GO:0000049 ... Q5SHQ0 25594181
    158 4wqu:CG (2.8) BS02 rna ? GO:0000049 ... Q5SHQ0 25594181
    159 4wqu:CH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    160 4wqu:CK (2.8) BS01 rna ? GO:0003735 ... Q8VVE3 25594181
    161 4wqu:CL (2.8) BS01 rna ? GO:0003735 ... Q5SLP6 25594181
    162 4wqu:CN (2.8) BS01 rna ? GO:0003729 ... P60488 25594181
    163 4wqu:CO (2.8) BS01 rna ? GO:0003735 ... Q5SHP8 25594181
    164 4wqu:CO (2.8) BS02 rna ? GO:0003735 ... Q5SHP8 25594181
    165 4wqu:CP (2.8) BS01 rna ? GO:0003735 ... Q5SHQ7 25594181
    166 4wqu:CQ (2.8) BS01 rna ? GO:0000049 ... P60489 25594181
    167 4wqu:CQ (2.8) BS02 rna ? GO:0000049 ... P60489 25594181
    168 4wqu:CQ (2.8) BS03 MG ? GO:0000049 ... P60489 25594181
    169 4wqu:CR (2.8) BS01 rna ? GO:0003735 ... Q9Z9H5 25594181
    170 4wqu:CS (2.8) BS01 rna ? GO:0003735 ... Q5SHQ4 25594181
    171 4wqu:CS (2.8) BS02 rna ? GO:0003735 ... Q5SHQ4 25594181
    172 4wqu:CT (2.8) BS01 rna ? GO:0003735 ... P60490 25594181
    173 4wqu:CT (2.8) BS02 rna ? GO:0003735 ... P60490 25594181
    174 4wqu:CU (2.8) BS01 rna ? GO:0000027 ... P60491 25594181
    175 4wqu:CU (2.8) BS02 MG ? GO:0000027 ... P60491 25594181
    176 4wqu:CU (2.8) BS03 MG ? GO:0000027 ... P60491 25594181
    177 4wqu:CV (2.8) BS01 rna ? GO:0003723 ... P60492 25594181
    178 4wqu:CV (2.8) BS02 MG ? GO:0003723 ... P60492 25594181
    179 4wqu:CV (2.8) BS03 MG ? GO:0003723 ... P60492 25594181
    180 4wqu:CW (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 25594181
    181 4wqu:CW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25594181
    182 4wqu:CX (2.8) BS01 rna ? GO:0000027 ... Q5SHP0 25594181
    183 4wqu:CY (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 25594181
    184 4wqu:CY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25594181
    185 4wqu:CZ (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 25594181
    186 4wqu:CZ (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 25594181
    187 4wqu:DB (2.8) BS01 rna ? GO:0003735 ... P80371 25594181
    188 4wqu:DC (2.8) BS01 rna ? GO:0003676 ... P80372 25594181
    189 4wqu:DD (2.8) BS01 rna ? GO:0003723 ... P80373 25594181
    190 4wqu:DD (2.8) BS02 SF4 ? GO:0003723 ... P80373 25594181
    191 4wqu:DE (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 25594181
    192 4wqu:DE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25594181
    193 4wqu:DF (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 25594181
    194 4wqu:DF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25594181
    195 4wqu:DG (2.8) BS01 rna ? GO:0000028 ... P17291 25594181
    196 4wqu:DH (2.8) BS01 rna N/A GO:0003735 ... N/A 25594181
    197 4wqu:DI (2.8) BS01 rna ? GO:0000049 ... P80374 25594181
    198 4wqu:DJ (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 25594181
    199 4wqu:DJ (2.8) BS02 MG ? GO:0000049 ... Q5SHN7 25594181
    200 4wqu:DK (2.8) BS01 rna ? GO:0003735 ... P80376 25594181
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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