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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v88:AA (3.0) BS01 rna ? GO:0000028 ... P32905 22096102
    2 4v88:AB (3.0) BS01 rna ? GO:0000462 ... P33442 22096102
    3 4v88:AC (3.0) BS01 rna ? GO:0000054 ... P25443 22096102
    4 4v88:AC (3.0) BS02 OHX ? GO:0000054 ... P25443 22096102
    5 4v88:AD (3.0) BS01 rna ? GO:0000054 ... P05750 22096102
    6 4v88:AE (3.0) BS01 rna ? GO:0002181 ... P0CX35 22096102
    7 4v88:AE (3.0) BS02 MG ? GO:0002181 ... P0CX35 22096102
    8 4v88:AF (3.0) BS01 rna ? GO:0000028 ... P26783 22096102
    9 4v88:AG (3.0) BS01 rna ? GO:0000462 ... P0CX37 22096102
    10 4v88:AH (3.0) BS01 rna ? GO:0002181 ... P26786 22096102
    11 4v88:AI (3.0) BS01 rna ? GO:0000462 ... P0CX39 22096102
    12 4v88:AI (3.0) BS02 rna ? GO:0000462 ... P0CX39 22096102
    13 4v88:AI (3.0) BS03 OHX ? GO:0000462 ... P0CX39 22096102
    14 4v88:AI (3.0) BS04 MG ? GO:0000462 ... P0CX39 22096102
    15 4v88:AJ (3.0) BS01 rna ? GO:0000462 ... O13516 22096102
    16 4v88:AK (3.0) BS01 rna ? GO:0000054 ... Q08745 22096102
    17 4v88:AL (3.0) BS01 rna ? GO:0000028 ... P0CX47 22096102
    18 4v88:AL (3.0) BS02 MG ? GO:0000028 ... P0CX47 22096102
    19 4v88:AL (3.0) BS03 MG ? GO:0000028 ... P0CX47 22096102
    20 4v88:AM (3.0) BS01 rna ? GO:0000028 ... P48589 22096102
    21 4v88:AN (3.0) BS01 rna ? GO:0000462 ... P05756 22096102
    22 4v88:AN (3.0) BS02 rna ? GO:0000462 ... P05756 22096102
    23 4v88:AN (3.0) BS03 OHX ? GO:0000462 ... P05756 22096102
    24 4v88:AO (3.0) BS01 rna ? GO:0000028 ... P06367 22096102
    25 4v88:AP (3.0) BS01 rna ? GO:0000028 ... Q01855 22096102
    26 4v88:AP (3.0) BS02 rna ? GO:0000028 ... Q01855 22096102
    27 4v88:AP (3.0) BS03 OHX ? GO:0000028 ... Q01855 22096102
    28 4v88:AQ (3.0) BS01 rna ? GO:0000462 ... P0CX51 22096102
    29 4v88:AR (3.0) BS01 rna ? GO:0000028 ... P02407 22096102
    30 4v88:AS (3.0) BS01 rna ? GO:0000054 ... P0CX55 22096102
    31 4v88:AS (3.0) BS02 MG ? GO:0000054 ... P0CX55 22096102
    32 4v88:AT (3.0) BS01 rna ? GO:0000028 ... P07280 22096102
    33 4v88:AU (3.0) BS01 rna ? GO:0000462 ... P38701 22096102
    34 4v88:AW (3.0) BS01 rna ? GO:0002181 ... P0C0W1 22096102
    35 4v88:AX (3.0) BS01 rna ? GO:0000462 ... P0CX29 22096102
    36 4v88:AY (3.0) BS01 rna ? GO:0000462 ... P0CX31 22096102
    37 4v88:AZ (3.0) BS01 rna ? GO:0002181 ... Q3E792 22096102
    38 4v88:Aa (3.0) BS01 rna ? GO:0000054 ... P39938 22096102
    39 4v88:Aa (3.0) BS02 ZN ? GO:0000054 ... P39938 22096102
    40 4v88:Ab (3.0) BS01 rna ? GO:0000028 ... P35997 22096102
    41 4v88:Ac (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 22096102
    42 4v88:Ad (3.0) BS01 rna ? GO:0002181 ... P41057 22096102
    43 4v88:Ad (3.0) BS02 OHX ? GO:0002181 ... P41057 22096102
    44 4v88:Ad (3.0) BS03 MG ? GO:0002181 ... P41057 22096102
    45 4v88:Ad (3.0) BS04 MG ? GO:0002181 ... P41057 22096102
    46 4v88:Ad (3.0) BS05 ZN ? GO:0002181 ... P41057 22096102
    47 4v88:Ae (3.0) BS01 rna ? GO:0002181 ... P0CX33 22096102
    48 4v88:Af (3.0) BS01 rna ? GO:0000028 ... P05759 22096102
    49 4v88:Af (3.0) BS02 ZN ? GO:0000028 ... P05759 22096102
    50 4v88:Ag (3.0) BS01 rna ? GO:0001965 ... P38011 22096102
    51 4v88:Ag (3.0) BS02 OHX ? GO:0001965 ... P38011 22096102
    52 4v88:Ah (3.0) BS01 rna ? GO:0000723 ... P39015 22096102
    53 4v88:Ah (3.0) BS02 rna ? GO:0000723 ... P39015 22096102
    54 4v88:BA (3.0) BS01 rna ? GO:0002181 ... P0CX45 22096102
    55 4v88:BA (3.0) BS02 rna ? GO:0002181 ... P0CX45 22096102
    56 4v88:BA (3.0) BS03 MG ? GO:0002181 ... P0CX45 22096102
    57 4v88:BA (3.0) BS04 MG ? GO:0002181 ... P0CX45 22096102
    58 4v88:BA (3.0) BS05 MG ? GO:0002181 ... P0CX45 22096102
    59 4v88:BA (3.0) BS06 MG ? GO:0002181 ... P0CX45 22096102
    60 4v88:BB (3.0) BS01 rna ? GO:0000027 ... P14126 22096102
    61 4v88:BB (3.0) BS02 OHX ? GO:0000027 ... P14126 22096102
    62 4v88:BB (3.0) BS03 OHX ? GO:0000027 ... P14126 22096102
    63 4v88:BB (3.0) BS04 MG ? GO:0000027 ... P14126 22096102
    64 4v88:BC (3.0) BS01 rna ? GO:0002181 ... P10664 22096102
    65 4v88:BC (3.0) BS02 rna ? GO:0002181 ... P10664 22096102
    66 4v88:BC (3.0) BS03 MG ? GO:0002181 ... P10664 22096102
    67 4v88:BC (3.0) BS04 OHX ? GO:0002181 ... P10664 22096102
    68 4v88:BC (3.0) BS05 MG ? GO:0002181 ... P10664 22096102
    69 4v88:BC (3.0) BS06 MG ? GO:0002181 ... P10664 22096102
    70 4v88:BC (3.0) BS07 MG ? GO:0002181 ... P10664 22096102
    71 4v88:BC (3.0) BS08 MG ? GO:0002181 ... P10664 22096102
    72 4v88:BD (3.0) BS01 rna ? GO:0000027 ... P26321 22096102
    73 4v88:BD (3.0) BS02 rna ? GO:0000027 ... P26321 22096102
    74 4v88:BD (3.0) BS03 OHX ? GO:0000027 ... P26321 22096102
    75 4v88:BE (3.0) BS01 rna ? GO:0000027 ... Q02326 22096102
    76 4v88:BE (3.0) BS02 MG ? GO:0000027 ... Q02326 22096102
    77 4v88:BF (3.0) BS01 rna ? GO:0000463 ... P05737 22096102
    78 4v88:BF (3.0) BS02 rna ? GO:0000463 ... P05737 22096102
    79 4v88:BF (3.0) BS03 MG ? GO:0000463 ... P05737 22096102
    80 4v88:BG (3.0) BS01 rna ? GO:0000470 ... P17076 22096102
    81 4v88:BG (3.0) BS02 rna ? GO:0000470 ... P17076 22096102
    82 4v88:BH (3.0) BS01 rna ? GO:0002181 ... P05738 22096102
    83 4v88:BI (3.0) BS01 rna ? GO:0000027 ... P41805 22096102
    84 4v88:BI (3.0) BS02 rna ? GO:0000027 ... P41805 22096102
    85 4v88:BI (3.0) BS03 MG ? GO:0000027 ... P41805 22096102
    86 4v88:BI (3.0) BS04 OHX ? GO:0000027 ... P41805 22096102
    87 4v88:BI (3.0) BS05 OHX ? GO:0000027 ... P41805 22096102
    88 4v88:BI (3.0) BS06 MG ? GO:0000027 ... P41805 22096102
    89 4v88:BI (3.0) BS07 MG ? GO:0000027 ... P41805 22096102
    90 4v88:BJ (3.0) BS01 rna ? GO:0000027 ... P0C0W9 22096102
    91 4v88:BJ (3.0) BS02 rna ? GO:0000027 ... P0C0W9 22096102
    92 4v88:BL (3.0) BS01 rna ? GO:0002181 ... Q12690 22096102
    93 4v88:BL (3.0) BS02 rna ? GO:0002181 ... Q12690 22096102
    94 4v88:BL (3.0) BS03 MG ? GO:0002181 ... Q12690 22096102
    95 4v88:BL (3.0) BS04 MG ? GO:0002181 ... Q12690 22096102
    96 4v88:BM (3.0) BS01 rna ? GO:0000027 ... P36105 22096102
    97 4v88:BN (3.0) BS01 rna ? GO:0002181 ... P05748 22096102
    98 4v88:BN (3.0) BS02 rna ? GO:0002181 ... P05748 22096102
    99 4v88:BN (3.0) BS03 OHX ? GO:0002181 ... P05748 22096102
    100 4v88:BN (3.0) BS04 MG ? GO:0002181 ... P05748 22096102
    101 4v88:BN (3.0) BS05 MG ? GO:0002181 ... P05748 22096102
    102 4v88:BN (3.0) BS06 MG ? GO:0002181 ... P05748 22096102
    103 4v88:BO (3.0) BS01 rna ? GO:0000470 ... P26784 22096102
    104 4v88:BO (3.0) BS02 MG ? GO:0000470 ... P26784 22096102
    105 4v88:BO (3.0) BS03 MG ? GO:0000470 ... P26784 22096102
    106 4v88:BO (3.0) BS04 MG ? GO:0000470 ... P26784 22096102
    107 4v88:BO (3.0) BS05 MG ? GO:0000470 ... P26784 22096102
    108 4v88:BO (3.0) BS06 MG ? GO:0000470 ... P26784 22096102
    109 4v88:BO (3.0) BS07 MG ? GO:0000470 ... P26784 22096102
    110 4v88:BP (3.0) BS01 rna ? GO:0000448 ... P05740 22096102
    111 4v88:BP (3.0) BS02 rna ? GO:0000448 ... P05740 22096102
    112 4v88:BP (3.0) BS03 MG ? GO:0000448 ... P05740 22096102
    113 4v88:BP (3.0) BS04 MG ? GO:0000448 ... P05740 22096102
    114 4v88:BP (3.0) BS05 OHX ? GO:0000448 ... P05740 22096102
    115 4v88:BP (3.0) BS06 OHX ? GO:0000448 ... P05740 22096102
    116 4v88:BP (3.0) BS07 MG ? GO:0000448 ... P05740 22096102
    117 4v88:BP (3.0) BS08 MG ? GO:0000448 ... P05740 22096102
    118 4v88:BQ (3.0) BS01 rna ? GO:0002181 ... P0CX49 22096102
    119 4v88:BQ (3.0) BS02 MG ? GO:0002181 ... P0CX49 22096102
    120 4v88:BQ (3.0) BS03 MG ? GO:0002181 ... P0CX49 22096102
    121 4v88:BQ (3.0) BS04 MG ? GO:0002181 ... P0CX49 22096102
    122 4v88:BR (3.0) BS01 rna ? GO:0002181 ... P0CX82 22096102
    123 4v88:BR (3.0) BS02 rna ? GO:0002181 ... P0CX82 22096102
    124 4v88:BR (3.0) BS03 OHX ? GO:0002181 ... P0CX82 22096102
    125 4v88:BR (3.0) BS04 OHX ? GO:0002181 ... P0CX82 22096102
    126 4v88:BR (3.0) BS05 MG ? GO:0002181 ... P0CX82 22096102
    127 4v88:BR (3.0) BS06 MG ? GO:0002181 ... P0CX82 22096102
    128 4v88:BS (3.0) BS01 rna ? GO:0002181 ... P0CX23 22096102
    129 4v88:BS (3.0) BS02 rna ? GO:0002181 ... P0CX23 22096102
    130 4v88:BS (3.0) BS03 MG ? GO:0002181 ... P0CX23 22096102
    131 4v88:BT (3.0) BS01 rna ? GO:0002181 ... Q02753 22096102
    132 4v88:BT (3.0) BS02 rna ? GO:0002181 ... Q02753 22096102
    133 4v88:BT (3.0) BS03 OHX ? GO:0002181 ... Q02753 22096102
    134 4v88:BT (3.0) BS04 MG ? GO:0002181 ... Q02753 22096102
    135 4v88:BU (3.0) BS01 rna ? GO:0002181 ... P05749 22096102
    136 4v88:BV (3.0) BS01 rna ? GO:0002181 ... P0CX41 22096102
    137 4v88:BV (3.0) BS02 rna ? GO:0002181 ... P0CX41 22096102
    138 4v88:BV (3.0) BS03 MG ? GO:0002181 ... P0CX41 22096102
    139 4v88:BW (3.0) BS01 rna ? GO:0002181 ... P04449 22096102
    140 4v88:BW (3.0) BS02 rna ? GO:0002181 ... P04449 22096102
    141 4v88:BX (3.0) BS01 rna ? GO:0000027 ... P04456 22096102
    142 4v88:BX (3.0) BS02 rna ? GO:0000027 ... P04456 22096102
    143 4v88:BY (3.0) BS01 rna ? GO:0002181 ... P05743 22096102
    144 4v88:BY (3.0) BS02 rna ? GO:0002181 ... P05743 22096102
    145 4v88:BY (3.0) BS03 MG ? GO:0002181 ... P05743 22096102
    146 4v88:BZ (3.0) BS01 rna ? GO:0002181 ... P0C2H6 22096102
    147 4v88:Ba (3.0) BS01 rna ? GO:0002181 ... P02406 22096102
    148 4v88:Ba (3.0) BS02 MG ? GO:0002181 ... P02406 22096102
    149 4v88:Ba (3.0) BS03 MG ? GO:0002181 ... P02406 22096102
    150 4v88:Ba (3.0) BS04 MG ? GO:0002181 ... P02406 22096102
    151 4v88:Ba (3.0) BS05 MG ? GO:0002181 ... P02406 22096102
    152 4v88:Ba (3.0) BS06 MG ? GO:0002181 ... P02406 22096102
    153 4v88:Bb (3.0) BS01 rna ? GO:0002181 ... P05747 22096102
    154 4v88:Bb (3.0) BS02 OHX ? GO:0002181 ... P05747 22096102
    155 4v88:Bc (3.0) BS01 rna ? GO:0002181 ... P14120 22096102
    156 4v88:Bd (3.0) BS01 rna ? GO:0002181 ... P0C2H8 22096102
    157 4v88:Bd (3.0) BS02 MG ? GO:0002181 ... P0C2H8 22096102
    158 4v88:Bd (3.0) BS03 MG ? GO:0002181 ... P0C2H8 22096102
    159 4v88:Be (3.0) BS01 rna ? GO:0002181 ... P38061 22096102
    160 4v88:Be (3.0) BS02 MG ? GO:0002181 ... P38061 22096102
    161 4v88:Be (3.0) BS03 MG ? GO:0002181 ... P38061 22096102
    162 4v88:Be (3.0) BS04 MG ? GO:0002181 ... P38061 22096102
    163 4v88:Bf (3.0) BS01 rna ? GO:0000027 ... P05744 22096102
    164 4v88:Bf (3.0) BS02 MG ? GO:0000027 ... P05744 22096102
    165 4v88:Bf (3.0) BS03 OHX ? GO:0000027 ... P05744 22096102
    166 4v88:Bf (3.0) BS04 MG ? GO:0000027 ... P05744 22096102
    167 4v88:Bg (3.0) BS01 rna ? GO:0002181 ... P87262 22096102
    168 4v88:Bg (3.0) BS02 MG ? GO:0002181 ... P87262 22096102
    169 4v88:Bh (3.0) BS01 rna ? GO:0000463 ... P0CX84 22096102
    170 4v88:Bh (3.0) BS02 rna ? GO:0000463 ... P0CX84 22096102
    171 4v88:Bi (3.0) BS01 rna ? GO:0002181 ... P05745 22096102
    172 4v88:Bj (3.0) BS01 rna ? GO:0000448 ... P49166 22096102
    173 4v88:Bj (3.0) BS02 rna ? GO:0000448 ... P49166 22096102
    174 4v88:Bj (3.0) BS03 OHX ? GO:0000448 ... P49166 22096102
    175 4v88:Bj (3.0) BS04 OHX ? GO:0000448 ... P49166 22096102
    176 4v88:Bj (3.0) BS05 OHX ? GO:0000448 ... P49166 22096102
    177 4v88:Bj (3.0) BS06 MG ? GO:0000448 ... P49166 22096102
    178 4v88:Bj (3.0) BS07 MG ? GO:0000448 ... P49166 22096102
    179 4v88:Bj (3.0) BS08 MG ? GO:0000448 ... P49166 22096102
    180 4v88:Bj (3.0) BS09 MG ? GO:0000448 ... P49166 22096102
    181 4v88:Bj (3.0) BS10 ZN ? GO:0000448 ... P49166 22096102
    182 4v88:Bk (3.0) BS01 rna ? GO:0002181 ... P49167 22096102
    183 4v88:Bl (3.0) BS01 rna ? GO:0002181 ... P04650 22096102
    184 4v88:Bl (3.0) BS02 rna ? GO:0002181 ... P04650 22096102
    185 4v88:Bl (3.0) BS03 OHX ? GO:0002181 ... P04650 22096102
    186 4v88:Bl (3.0) BS04 MG ? GO:0002181 ... P04650 22096102
    187 4v88:Bm (3.0) BS01 rna ? GO:0000027 ... P0CH08 22096102
    188 4v88:Bm (3.0) BS02 MG ? GO:0000027 ... P0CH08 22096102
    189 4v88:Bm (3.0) BS03 ZN ? GO:0000027 ... P0CH08 22096102
    190 4v88:Bo (3.0) BS01 rna ? GO:0002181 ... P0CX27 22096102
    191 4v88:Bo (3.0) BS02 OHX ? GO:0002181 ... P0CX27 22096102
    192 4v88:Bo (3.0) BS03 ZN ? GO:0002181 ... P0CX27 22096102
    193 4v88:Bp (3.0) BS01 rna ? GO:0002181 ... P0CX25 22096102
    194 4v88:Bp (3.0) BS02 ZN ? GO:0002181 ... P0CX25 22096102
    195 4v88:CA (3.0) BS01 rna ? GO:0000028 ... P32905 22096102
    196 4v88:CB (3.0) BS01 rna ? GO:0000462 ... P33442 22096102
    197 4v88:CB (3.0) BS02 OHX ? GO:0000462 ... P33442 22096102
    198 4v88:CC (3.0) BS01 rna ? GO:0000054 ... P25443 22096102
    199 4v88:CD (3.0) BS01 rna ? GO:0000054 ... P05750 22096102
    200 4v88:CE (3.0) BS01 rna ? GO:0002181 ... P0CX35 22096102
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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