Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 117 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7u:AB (3.1) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    2 4v7u:AC (3.1) BS01 rna ? GO:0003676 ... P0A7V3 20876128
    3 4v7u:AD (3.1) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    4 4v7u:AE (3.1) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    5 4v7u:AF (3.1) BS01 rna ? GO:0003735 ... P02358 20876128
    6 4v7u:AG (3.1) BS01 rna ? GO:0003723 ... P02359 20876128
    7 4v7u:AH (3.1) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    8 4v7u:AI (3.1) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    9 4v7u:AJ (3.1) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    10 4v7u:AK (3.1) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    11 4v7u:AL (3.1) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    12 4v7u:AM (3.1) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    13 4v7u:AN (3.1) BS01 rna ? GO:0000028 ... P0AG59 20876128
    14 4v7u:AO (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    15 4v7u:AO (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    16 4v7u:AP (3.1) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    17 4v7u:AQ (3.1) BS01 rna ? GO:0000028 ... P0AG63 20876128
    18 4v7u:AR (3.1) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    19 4v7u:AS (3.1) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    20 4v7u:AT (3.1) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    21 4v7u:AU (3.1) BS01 rna ? GO:0003735 ... P68679 20876128
    22 4v7u:B0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    23 4v7u:B1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    24 4v7u:B2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    25 4v7u:B3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    26 4v7u:B4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    27 4v7u:B4 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 20876128
    28 4v7u:BC (3.1) BS01 rna ? GO:0000027 ... P60422 20876128
    29 4v7u:BD (3.1) BS01 rna ? GO:0000027 ... P60438 20876128
    30 4v7u:BE (3.1) BS01 rna ? GO:0001070 ... P60723 20876128
    31 4v7u:BF (3.1) BS01 rna ? GO:0000027 ... P62399 20876128
    32 4v7u:BF (3.1) BS02 rna ? GO:0000027 ... P62399 20876128
    33 4v7u:BG (3.1) BS01 rna ? GO:0000027 ... P0AG55 20876128
    34 4v7u:BH (3.1) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    35 4v7u:BI (3.1) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    36 4v7u:BJ (3.1) BS01 rna ? GO:0002181 ... P0AA10 20876128
    37 4v7u:BK (3.1) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    38 4v7u:BK (3.1) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    39 4v7u:BL (3.1) BS01 rna ? GO:0002181 ... P02413 20876128
    40 4v7u:BM (3.1) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    41 4v7u:BM (3.1) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    42 4v7u:BN (3.1) BS01 rna ? GO:0000027 ... P0AG44 20876128
    43 4v7u:BO (3.1) BS01 rna ? GO:0002181 ... P0C018 20876128
    44 4v7u:BO (3.1) BS02 rna ? GO:0002181 ... P0C018 20876128
    45 4v7u:BP (3.1) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    46 4v7u:BP (3.1) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    47 4v7u:BQ (3.1) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    48 4v7u:BR (3.1) BS01 rna ? GO:0002181 ... P0AG48 20876128
    49 4v7u:BS (3.1) BS01 rna ? GO:0002181 ... P61175 20876128
    50 4v7u:BT (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    51 4v7u:BU (3.1) BS01 rna ? GO:0000027 ... P60624 20876128
    52 4v7u:BV (3.1) BS01 rna ? GO:0000027 ... P68919 20876128
    53 4v7u:BV (3.1) BS02 rna ? GO:0000027 ... P68919 20876128
    54 4v7u:BW (3.1) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    55 4v7u:BX (3.1) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    56 4v7u:BY (3.1) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    57 4v7u:BZ (3.1) BS01 rna ? GO:0000027 ... P0AG51 20876128
    58 4v7u:BZ (3.1) BS02 rna ? GO:0000027 ... P0AG51 20876128
    59 4v7u:CB (3.1) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    60 4v7u:CC (3.1) BS01 rna ? GO:0003676 ... P0A7V3 20876128
    61 4v7u:CD (3.1) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    62 4v7u:CD (3.1) BS02 rna ? GO:0000028 ... P0A7V8 20876128
    63 4v7u:CE (3.1) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    64 4v7u:CF (3.1) BS01 rna ? GO:0003735 ... P02358 20876128
    65 4v7u:CG (3.1) BS01 rna ? GO:0003723 ... P02359 20876128
    66 4v7u:CH (3.1) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    67 4v7u:CI (3.1) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    68 4v7u:CJ (3.1) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    69 4v7u:CK (3.1) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    70 4v7u:CL (3.1) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    71 4v7u:CM (3.1) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    72 4v7u:CN (3.1) BS01 rna ? GO:0000028 ... P0AG59 20876128
    73 4v7u:CO (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    74 4v7u:CO (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    75 4v7u:CP (3.1) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    76 4v7u:CQ (3.1) BS01 rna ? GO:0000028 ... P0AG63 20876128
    77 4v7u:CR (3.1) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    78 4v7u:CS (3.1) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    79 4v7u:CT (3.1) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    80 4v7u:CU (3.1) BS01 rna ? GO:0003735 ... P68679 20876128
    81 4v7u:D0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    82 4v7u:D1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    83 4v7u:D2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    84 4v7u:D3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    85 4v7u:D4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    86 4v7u:DC (3.1) BS01 rna ? GO:0000027 ... P60422 20876128
    87 4v7u:DD (3.1) BS01 rna ? GO:0000027 ... P60438 20876128
    88 4v7u:DE (3.1) BS01 rna ? GO:0001070 ... P60723 20876128
    89 4v7u:DF (3.1) BS01 rna ? GO:0000027 ... P62399 20876128
    90 4v7u:DF (3.1) BS02 rna ? GO:0000027 ... P62399 20876128
    91 4v7u:DG (3.1) BS01 rna ? GO:0000027 ... P0AG55 20876128
    92 4v7u:DH (3.1) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    93 4v7u:DI (3.1) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    94 4v7u:DJ (3.1) BS01 rna ? GO:0002181 ... P0AA10 20876128
    95 4v7u:DK (3.1) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    96 4v7u:DK (3.1) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    97 4v7u:DL (3.1) BS01 rna ? GO:0002181 ... P02413 20876128
    98 4v7u:DM (3.1) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    99 4v7u:DM (3.1) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    100 4v7u:DN (3.1) BS01 rna ? GO:0000027 ... P0AG44 20876128
    101 4v7u:DO (3.1) BS01 rna ? GO:0002181 ... P0C018 20876128
    102 4v7u:DO (3.1) BS02 rna ? GO:0002181 ... P0C018 20876128
    103 4v7u:DP (3.1) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    104 4v7u:DP (3.1) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    105 4v7u:DQ (3.1) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    106 4v7u:DR (3.1) BS01 rna ? GO:0002181 ... P0AG48 20876128
    107 4v7u:DS (3.1) BS01 rna ? GO:0002181 ... P61175 20876128
    108 4v7u:DT (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    109 4v7u:DU (3.1) BS01 rna ? GO:0000027 ... P60624 20876128
    110 4v7u:DV (3.1) BS01 rna ? GO:0000027 ... P68919 20876128
    111 4v7u:DV (3.1) BS02 rna ? GO:0000027 ... P68919 20876128
    112 4v7u:DW (3.1) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    113 4v7u:DW (3.1) BS02 rna ? GO:0000027 ... P0A7L8 20876128
    114 4v7u:DX (3.1) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    115 4v7u:DY (3.1) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    116 4v7u:DZ (3.1) BS01 rna ? GO:0000027 ... P0AG51 20876128
    117 4v7u:DZ (3.1) BS02 rna ? GO:0000027 ... P0AG51 20876128
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218