Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7f:B (8.7) BS01 rna ? GO:0002181 ... P0CX45 24662372
    2 4v7f:C (8.7) BS01 rna ? GO:0000027 ... P14126 24662372
    3 4v7f:D (8.7) BS01 rna ? GO:0002181 ... P10664 24662372
    4 4v7f:E (8.7) BS01 rna ? GO:0000027 ... P0C0W9 24662372
    5 4v7f:E (8.7) BS02 rna ? GO:0000027 ... P0C0W9 24662372
    6 4v7f:J (8.7) BS01 rna ? GO:0000470 ... P26784 24662372
    7 4v7f:K (8.7) BS01 rna ? GO:0002181 ... Q12690 24662372
    8 4v7f:L (8.7) BS01 rna ? GO:0002181 ... P0CX41 24662372
    9 4v7f:N (8.7) BS01 rna ? GO:0002181 ... P02406 24662372
    10 4v7f:O (8.7) BS01 rna ? GO:0002181 ... P05748 24662372
    11 4v7f:P (8.7) BS01 rna ? GO:0000027 ... P26321 24662372
    12 4v7f:P (8.7) BS02 rna ? GO:0000027 ... P26321 24662372
    13 4v7f:Q (8.7) BS01 rna ? GO:0002181 ... P0CX49 24662372
    14 4v7f:R (8.7) BS01 rna ? GO:0002181 ... P0CX82 24662372
    15 4v7f:T (8.7) BS01 rna ? GO:0002181 ... Q02753 24662372
    16 4v7f:U (8.7) BS01 rna ? GO:0000448 ... P05740 24662372
    17 4v7f:W (8.7) BS01 rna ? GO:0000027 ... P04456 24662372
    18 4v7f:Y (8.7) BS01 rna ? GO:0002181 ... P0C2H6 24662372
    19 4v7f:d (8.7) BS01 rna ? GO:0002181 ... P38061 24662372
    20 4v7f:e (8.7) BS01 rna ? GO:0000027 ... P05744 24662372
    21 4v7f:f (8.7) BS01 rna ? GO:0002181 ... P87262 24662372
    22 4v7f:g (8.7) BS01 rna ? GO:0002181 ... P05745 24662372
    23 4v7f:k (8.7) BS01 rna ? GO:0002181 ... P0CX25 24662372
    24 4v7f:l (8.7) BS01 rna 3.-.-.- GO:0000055 ... Q03862 24662372
    25 4v7f:n (8.7) BS01 rna ? GO:0000027 ... P33201 24662372
    26 4v7f:o (8.7) BS01 rna ? GO:0000054 ... Q02892 24662372
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417