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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 352 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v6f:A0 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 20400952
    2 4v6f:A0 (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 20400952
    3 4v6f:A1 (3.1) BS01 rna ? GO:0000027 ... P60491 20400952
    4 4v6f:A1 (3.1) BS02 MG ? GO:0000027 ... P60491 20400952
    5 4v6f:A1 (3.1) BS03 MG ? GO:0000027 ... P60491 20400952
    6 4v6f:A1 (3.1) BS04 MG ? GO:0000027 ... P60491 20400952
    7 4v6f:A2 (3.1) BS01 rna ? GO:0003723 ... P60492 20400952
    8 4v6f:A2 (3.1) BS02 MG ? GO:0003723 ... P60492 20400952
    9 4v6f:A3 (3.1) BS01 rna ? GO:0003735 ... P60493 20400952
    10 4v6f:A3 (3.1) BS02 rna ? GO:0003735 ... P60493 20400952
    11 4v6f:A3 (3.1) BS03 rna ? GO:0003735 ... P60493 20400952
    12 4v6f:A4 (3.1) BS01 ZN ? GO:0003735 ... Q5SJE1 20400952
    13 4v6f:A5 (3.1) BS01 rna ? GO:0003735 ... P80339 20400952
    14 4v6f:A5 (3.1) BS02 MG ? GO:0003735 ... P80339 20400952
    15 4v6f:A6 (3.1) BS01 rna ? GO:0000049 ... P35871 20400952
    16 4v6f:A7 (3.1) BS01 rna ? GO:0003735 ... P80340 20400952
    17 4v6f:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 20400952
    18 4v6f:A8 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 20400952
    19 4v6f:AD (3.1) BS01 rna ? GO:0002181 ... P60405 20400952
    20 4v6f:AD (3.1) BS02 MG ? GO:0002181 ... P60405 20400952
    21 4v6f:AD (3.1) BS03 MG ? GO:0002181 ... P60405 20400952
    22 4v6f:AD (3.1) BS04 MG ? GO:0002181 ... P60405 20400952
    23 4v6f:AD (3.1) BS05 MG ? GO:0002181 ... P60405 20400952
    24 4v6f:AD (3.1) BS06 MG ? GO:0002181 ... P60405 20400952
    25 4v6f:AD (3.1) BS07 MG ? GO:0002181 ... P60405 20400952
    26 4v6f:AE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 20400952
    27 4v6f:AE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 20400952
    28 4v6f:AF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 20400952
    29 4v6f:AF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 20400952
    30 4v6f:AF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 20400952
    31 4v6f:AF (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 20400952
    32 4v6f:AF (3.1) BS05 MG ? GO:0003735 ... Q5SHN9 20400952
    33 4v6f:AG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 20400952
    34 4v6f:AG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 20400952
    35 4v6f:AG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 20400952
    36 4v6f:AG (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 20400952
    37 4v6f:AH (3.1) BS01 rna ? GO:0002181 ... A0A0M9ADP1 20400952
    38 4v6f:AK (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 20400952
    39 4v6f:AK (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 20400952
    40 4v6f:AM (3.1) BS01 rna ? GO:0003729 ... P60488 20400952
    41 4v6f:AN (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 20400952
    42 4v6f:AN (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 20400952
    43 4v6f:AO (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 20400952
    44 4v6f:AO (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 20400952
    45 4v6f:AO (3.1) BS03 MG ? GO:0003735 ... Q5SHQ7 20400952
    46 4v6f:AO (3.1) BS04 MG ? GO:0003735 ... Q5SHQ7 20400952
    47 4v6f:AO (3.1) BS05 MG ? GO:0003735 ... Q5SHQ7 20400952
    48 4v6f:AP (3.1) BS01 rna ? GO:0000049 ... P60489 20400952
    49 4v6f:AP (3.1) BS02 rna ? GO:0000049 ... P60489 20400952
    50 4v6f:AP (3.1) BS03 rna ? GO:0000049 ... P60489 20400952
    51 4v6f:AP (3.1) BS04 MG ? GO:0000049 ... P60489 20400952
    52 4v6f:AQ (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 20400952
    53 4v6f:AQ (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 20400952
    54 4v6f:AQ (3.1) BS03 MG ? GO:0003735 ... Q5SHQ4 20400952
    55 4v6f:AQ (3.1) BS04 MG ? GO:0003735 ... Q5SHQ4 20400952
    56 4v6f:AQ (3.1) BS05 MG ? GO:0003735 ... Q5SHQ4 20400952
    57 4v6f:AR (3.1) BS01 rna ? GO:0003735 ... P60490 20400952
    58 4v6f:AR (3.1) BS02 rna ? GO:0003735 ... P60490 20400952
    59 4v6f:AR (3.1) BS03 MG ? GO:0003735 ... P60490 20400952
    60 4v6f:AR (3.1) BS04 MG ? GO:0003735 ... P60490 20400952
    61 4v6f:AS (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 20400952
    62 4v6f:AS (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 20400952
    63 4v6f:AT (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 20400952
    64 4v6f:AT (3.1) BS02 MG ? GO:0000027 ... Q5SHP0 20400952
    65 4v6f:AT (3.1) BS03 MG ? GO:0000027 ... Q5SHP0 20400952
    66 4v6f:AT (3.1) BS04 MG ? GO:0000027 ... Q5SHP0 20400952
    67 4v6f:AT (3.1) BS05 MG ? GO:0000027 ... Q5SHP0 20400952
    68 4v6f:AU (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 20400952
    69 4v6f:AU (3.1) BS02 MG ? GO:0003723 ... Q5SHP9 20400952
    70 4v6f:AU (3.1) BS03 MG ? GO:0003723 ... Q5SHP9 20400952
    71 4v6f:AV (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 20400952
    72 4v6f:AV (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 20400952
    73 4v6f:AW (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 20400952
    74 4v6f:AX (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 20400952
    75 4v6f:AX (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 20400952
    76 4v6f:AZ (3.1) BS01 rna ? GO:0003735 ... P60494 20400952
    77 4v6f:AZ (3.1) BS02 MG ? GO:0003735 ... P60494 20400952
    78 4v6f:BE (3.1) BS01 rna ? GO:0003735 ... P80371 20400952
    79 4v6f:BE (3.1) BS02 MG ? GO:0003735 ... P80371 20400952
    80 4v6f:BE (3.1) BS03 MG ? GO:0003735 ... P80371 20400952
    81 4v6f:BF (3.1) BS01 rna ? GO:0003676 ... P80372 20400952
    82 4v6f:BF (3.1) BS02 rna ? GO:0003676 ... P80372 20400952
    83 4v6f:BF (3.1) BS03 MG ? GO:0003676 ... P80372 20400952
    84 4v6f:BG (3.1) BS01 rna ? GO:0003723 ... P80373 20400952
    85 4v6f:BG (3.1) BS02 rna ? GO:0003723 ... P80373 20400952
    86 4v6f:BG (3.1) BS03 MG ? GO:0003723 ... P80373 20400952
    87 4v6f:BG (3.1) BS04 MG ? GO:0003723 ... P80373 20400952
    88 4v6f:BG (3.1) BS05 MG ? GO:0003723 ... P80373 20400952
    89 4v6f:BG (3.1) BS06 ZN ? GO:0003723 ... P80373 20400952
    90 4v6f:BH (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 20400952
    91 4v6f:BH (3.1) BS02 MG ? GO:0003723 ... Q5SHQ5 20400952
    92 4v6f:BH (3.1) BS03 MG ? GO:0003723 ... Q5SHQ5 20400952
    93 4v6f:BH (3.1) BS04 MG ? GO:0003723 ... Q5SHQ5 20400952
    94 4v6f:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 20400952
    95 4v6f:BI (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 20400952
    96 4v6f:BJ (3.1) BS01 rna ? GO:0000028 ... P17291 20400952
    97 4v6f:BJ (3.1) BS02 rna ? GO:0000028 ... P17291 20400952
    98 4v6f:BK (3.1) BS01 rna ? GO:0003735 ... P0DOY9 20400952
    99 4v6f:BK (3.1) BS02 MG ? GO:0003735 ... P0DOY9 20400952
    100 4v6f:BK (3.1) BS03 MG ? GO:0003735 ... P0DOY9 20400952
    101 4v6f:BL (3.1) BS01 rna ? GO:0000049 ... P80374 20400952
    102 4v6f:BL (3.1) BS02 rna ? GO:0000049 ... P80374 20400952
    103 4v6f:BL (3.1) BS03 MG ? GO:0000049 ... P80374 20400952
    104 4v6f:BL (3.1) BS04 MG ? GO:0000049 ... P80374 20400952
    105 4v6f:BM (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 20400952
    106 4v6f:BN (3.1) BS01 rna ? GO:0003735 ... P80376 20400952
    107 4v6f:BN (3.1) BS02 MG ? GO:0003735 ... P80376 20400952
    108 4v6f:BO (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 20400952
    109 4v6f:BO (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 20400952
    110 4v6f:BP (3.1) BS01 rna ? GO:0000049 ... P80377 20400952
    111 4v6f:BP (3.1) BS02 rna ? GO:0000049 ... P80377 20400952
    112 4v6f:BP (3.1) BS03 rna ? GO:0000049 ... P80377 20400952
    113 4v6f:BP (3.1) BS04 MG ? GO:0000049 ... P80377 20400952
    114 4v6f:BQ (3.1) BS01 rna ? GO:0003735 ... P0DOY6 20400952
    115 4v6f:BQ (3.1) BS02 MG ? GO:0003735 ... P0DOY6 20400952
    116 4v6f:BQ (3.1) BS03 ZN ? GO:0003735 ... P0DOY6 20400952
    117 4v6f:BR (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 20400952
    118 4v6f:BR (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 20400952
    119 4v6f:BS (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 20400952
    120 4v6f:BS (3.1) BS02 MG ? GO:0003735 ... Q5SJH3 20400952
    121 4v6f:BS (3.1) BS03 MG ? GO:0003735 ... Q5SJH3 20400952
    122 4v6f:BS (3.1) BS04 MG ? GO:0003735 ... Q5SJH3 20400952
    123 4v6f:BS (3.1) BS05 MG ? GO:0003735 ... Q5SJH3 20400952
    124 4v6f:BS (3.1) BS06 MG ? GO:0003735 ... Q5SJH3 20400952
    125 4v6f:BT (3.1) BS01 rna ? GO:0003735 ... P0DOY7 20400952
    126 4v6f:BT (3.1) BS02 MG ? GO:0003735 ... P0DOY7 20400952
    127 4v6f:BU (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 20400952
    128 4v6f:BV (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 20400952
    129 4v6f:BV (3.1) BS02 MG ? GO:0000028 ... Q5SHP2 20400952
    130 4v6f:BW (3.1) BS01 rna ? GO:0003723 ... P80380 20400952
    131 4v6f:BW (3.1) BS02 MG ? GO:0003723 ... P80380 20400952
    132 4v6f:BW (3.1) BS03 MG ? GO:0003723 ... P80380 20400952
    133 4v6f:BW (3.1) BS04 MG ? GO:0003723 ... P80380 20400952
    134 4v6f:BW (3.1) BS05 MG ? GO:0003723 ... P80380 20400952
    135 4v6f:CE (3.1) BS01 rna ? GO:0003735 ... P80371 20400952
    136 4v6f:CE (3.1) BS02 MG ? GO:0003735 ... P80371 20400952
    137 4v6f:CE (3.1) BS03 MG ? GO:0003735 ... P80371 20400952
    138 4v6f:CE (3.1) BS04 MG ? GO:0003735 ... P80371 20400952
    139 4v6f:CE (3.1) BS05 MG ? GO:0003735 ... P80371 20400952
    140 4v6f:CF (3.1) BS01 rna ? GO:0003676 ... P80372 20400952
    141 4v6f:CF (3.1) BS02 rna ? GO:0003676 ... P80372 20400952
    142 4v6f:CF (3.1) BS03 MG ? GO:0003676 ... P80372 20400952
    143 4v6f:CG (3.1) BS01 rna ? GO:0003723 ... P80373 20400952
    144 4v6f:CG (3.1) BS02 rna ? GO:0003723 ... P80373 20400952
    145 4v6f:CG (3.1) BS03 ZN ? GO:0003723 ... P80373 20400952
    146 4v6f:CG (3.1) BS04 MG ? GO:0003723 ... P80373 20400952
    147 4v6f:CG (3.1) BS05 MG ? GO:0003723 ... P80373 20400952
    148 4v6f:CG (3.1) BS06 MG ? GO:0003723 ... P80373 20400952
    149 4v6f:CG (3.1) BS07 MG ? GO:0003723 ... P80373 20400952
    150 4v6f:CG (3.1) BS08 MG ? GO:0003723 ... P80373 20400952
    151 4v6f:CH (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 20400952
    152 4v6f:CH (3.1) BS02 rna ? GO:0003723 ... Q5SHQ5 20400952
    153 4v6f:CH (3.1) BS03 MG ? GO:0003723 ... Q5SHQ5 20400952
    154 4v6f:CH (3.1) BS04 MG ? GO:0003723 ... Q5SHQ5 20400952
    155 4v6f:CH (3.1) BS05 MG ? GO:0003723 ... Q5SHQ5 20400952
    156 4v6f:CI (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 20400952
    157 4v6f:CI (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 20400952
    158 4v6f:CJ (3.1) BS01 rna ? GO:0000028 ... P17291 20400952
    159 4v6f:CJ (3.1) BS02 rna ? GO:0000028 ... P17291 20400952
    160 4v6f:CJ (3.1) BS03 MG ? GO:0000028 ... P17291 20400952
    161 4v6f:CK (3.1) BS01 rna ? GO:0003735 ... P0DOY9 20400952
    162 4v6f:CK (3.1) BS02 MG ? GO:0003735 ... P0DOY9 20400952
    163 4v6f:CK (3.1) BS03 MG ? GO:0003735 ... P0DOY9 20400952
    164 4v6f:CK (3.1) BS04 MG ? GO:0003735 ... P0DOY9 20400952
    165 4v6f:CK (3.1) BS05 MG ? GO:0003735 ... P0DOY9 20400952
    166 4v6f:CL (3.1) BS01 rna ? GO:0000049 ... P80374 20400952
    167 4v6f:CL (3.1) BS02 rna ? GO:0000049 ... P80374 20400952
    168 4v6f:CL (3.1) BS03 MG ? GO:0000049 ... P80374 20400952
    169 4v6f:CM (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 20400952
    170 4v6f:CM (3.1) BS02 MG ? GO:0000049 ... Q5SHN7 20400952
    171 4v6f:CM (3.1) BS03 MG ? GO:0000049 ... Q5SHN7 20400952
    172 4v6f:CN (3.1) BS01 rna ? GO:0003735 ... P80376 20400952
    173 4v6f:CN (3.1) BS02 MG ? GO:0003735 ... P80376 20400952
    174 4v6f:CO (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 20400952
    175 4v6f:CO (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 20400952
    176 4v6f:CP (3.1) BS01 rna ? GO:0000049 ... P80377 20400952
    177 4v6f:CP (3.1) BS02 rna ? GO:0000049 ... P80377 20400952
    178 4v6f:CP (3.1) BS03 rna ? GO:0000049 ... P80377 20400952
    179 4v6f:CP (3.1) BS04 MG ? GO:0000049 ... P80377 20400952
    180 4v6f:CP (3.1) BS05 MG ? GO:0000049 ... P80377 20400952
    181 4v6f:CQ (3.1) BS01 rna ? GO:0003735 ... P0DOY6 20400952
    182 4v6f:CQ (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 20400952
    183 4v6f:CQ (3.1) BS03 MG ? GO:0003735 ... P0DOY6 20400952
    184 4v6f:CQ (3.1) BS04 MG ? GO:0003735 ... P0DOY6 20400952
    185 4v6f:CR (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 20400952
    186 4v6f:CR (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 20400952
    187 4v6f:CR (3.1) BS03 MG ? GO:0003735 ... Q5SJ76 20400952
    188 4v6f:CS (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 20400952
    189 4v6f:CS (3.1) BS02 MG ? GO:0003735 ... Q5SJH3 20400952
    190 4v6f:CS (3.1) BS03 MG ? GO:0003735 ... Q5SJH3 20400952
    191 4v6f:CS (3.1) BS04 MG ? GO:0003735 ... Q5SJH3 20400952
    192 4v6f:CT (3.1) BS01 rna ? GO:0003735 ... P0DOY7 20400952
    193 4v6f:CT (3.1) BS02 MG ? GO:0003735 ... P0DOY7 20400952
    194 4v6f:CU (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 20400952
    195 4v6f:CV (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 20400952
    196 4v6f:CV (3.1) BS02 MG ? GO:0000028 ... Q5SHP2 20400952
    197 4v6f:CV (3.1) BS03 MG ? GO:0000028 ... Q5SHP2 20400952
    198 4v6f:CW (3.1) BS01 rna ? GO:0003723 ... P80380 20400952
    199 4v6f:CW (3.1) BS02 MG ? GO:0003723 ... P80380 20400952
    200 4v6f:D0 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 20400952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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