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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4a:AB (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    2 4v4a:AC (9.5) BS01 rna N/A GO:0003676 ... N/A 12853578
    3 4v4a:AD (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    4 4v4a:AE (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    5 4v4a:AF (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    6 4v4a:AG (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    7 4v4a:AH (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    8 4v4a:AI (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    9 4v4a:AJ (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    10 4v4a:AK (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    11 4v4a:AL (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    12 4v4a:AM (9.5) BS01 rna N/A GO:0003676 ... N/A 12853578
    13 4v4a:AM (9.5) BS02 rna N/A GO:0003676 ... N/A 12853578
    14 4v4a:AN (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    15 4v4a:AO (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    16 4v4a:AP (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    17 4v4a:AQ (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    18 4v4a:AQ (9.5) BS02 rna N/A GO:0003735 ... N/A 12853578
    19 4v4a:AR (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    20 4v4a:AS (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    21 4v4a:AT (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    22 4v4a:B1 (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    23 4v4a:B5 (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    24 4v4a:BA (9.5) BS01 rna N/A GO:0003723 ... N/A 12853578
    25 4v4a:BB (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    26 4v4a:BC (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    27 4v4a:BG (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    28 4v4a:BJ (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    29 4v4a:BL (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    30 4v4a:BO (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    31 4v4a:BQ (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    32 4v4a:BX (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    33 4v4a:BZ (9.5) BS01 rna N/A GO:0003735 ... N/A 12853578
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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