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BioLiP
Download all results in tab-seperated text for 160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4bts:A0 (3.703) BS01 rna ? GO:0003723 ... I7MK25 23851459
    2 4bts:A1 (3.703) BS01 rna ? GO:0000028 ... E6PBU6 23851459
    3 4bts:A2 (3.703) BS01 rna ? GO:0000462 ... E6PBS6 23851459
    4 4bts:A3 (3.703) BS01 rna ? GO:0003735 ... E6PBS5 23851459
    5 4bts:A4 (3.703) BS01 rna ? GO:0003735 ... E6PBR8 23851459
    6 4bts:A5 (3.703) BS01 rna ? GO:0003729 ... E6PBU4 23851459
    7 4bts:A5 (3.703) BS02 ZN ? GO:0003729 ... E6PBU4 23851459
    8 4bts:A6 (3.703) BS01 rna ? GO:0000028 ... E6PBU5 23851459
    9 4bts:A6 (3.703) BS02 ZN ? GO:0000028 ... E6PBU5 23851459
    10 4bts:A7 (3.703) BS01 rna ? GO:0003723 ... E6PBS8 23851459
    11 4bts:A8 (3.703) BS01 rna ? GO:0003735 ... E6PBU3 23851459
    12 4bts:A9 (3.703) BS01 rna ? GO:0003677 ... E6PBU9 23851459
    13 4bts:A9 (3.703) BS02 ZN ? GO:0003677 ... E6PBU9 23851459
    14 4bts:AB (3.703) BS01 rna ? GO:0000028 ... E6PBR9 23851459
    15 4bts:AC (3.703) BS01 rna ? GO:0003723 ... E6PBS1 23851459
    16 4bts:AD (3.703) BS01 rna ? GO:0003723 ... E6PBS7 23851459
    17 4bts:AE (3.703) BS01 rna ? GO:0003723 ... E6PBS0 23851459
    18 4bts:AF (3.703) BS01 rna ? GO:0003723 ... E6PBV1 23851459
    19 4bts:AG (3.703) BS01 rna ? GO:0000028 ... E6PBS3 23851459
    20 4bts:AH (3.703) BS01 rna ? GO:0003735 ... E6PBU0 23851459
    21 4bts:AI (3.703) BS01 rna ? GO:0000462 ... E6PBT4 23851459
    22 4bts:AJ (3.703) BS01 rna ? GO:0003735 ... E6PBT8 23851459
    23 4bts:AK (3.703) BS01 rna ? GO:0000028 ... E6PBT2 23851459
    24 4bts:AL (3.703) BS01 rna ? GO:0003735 ... P06147 23851459
    25 4bts:AM (3.703) BS01 rna ? GO:0003676 ... E6PBT6 23851459
    26 4bts:AN (3.703) BS01 rna ? GO:0003735 ... E6PBU7 23851459
    27 4bts:AN (3.703) BS02 ZN ? GO:0003735 ... E6PBU7 23851459
    28 4bts:AO (3.703) BS01 rna ? GO:0003735 ... E6PBT1 23851459
    29 4bts:AP (3.703) BS01 rna ? GO:0003735 ... E6PBU2 23851459
    30 4bts:AQ (3.703) BS01 rna ? GO:0003735 ... E6PBS9 23851459
    31 4bts:AR (3.703) BS01 rna ? GO:0001934 ... E6PBV0 23851459
    32 4bts:AS (3.703) BS01 rna ? GO:0000028 ... E6PBT3 23851459
    33 4bts:AT (3.703) BS01 rna ? GO:0000028 ... E6PBT7 23851459
    34 4bts:AU (3.703) BS01 rna ? GO:0003735 ... E6PBT0 23851459
    35 4bts:AV (3.703) BS01 rna ? GO:0003735 ... E6PBT5 23851459
    36 4bts:AW (3.703) BS01 rna ? GO:0003723 ... E6PBS2 23851459
    37 4bts:AW (3.703) BS02 rna ? GO:0003723 ... E6PBS2 23851459
    38 4bts:AX (3.703) BS01 rna ? GO:0003735 ... E6PBU8 23851459
    39 4bts:AY (3.703) BS01 rna ? GO:0003735 ... E6PBS4 23851459
    40 4bts:AZ (3.703) BS01 rna ? GO:0000447 ... E6PBT9 23851459
    41 4bts:B0 (3.703) BS01 rna ? GO:0003723 ... I7MK25 23851459
    42 4bts:B1 (3.703) BS01 rna ? GO:0000028 ... E6PBU6 23851459
    43 4bts:B2 (3.703) BS01 rna ? GO:0000462 ... E6PBS6 23851459
    44 4bts:B3 (3.703) BS01 rna ? GO:0003735 ... E6PBS5 23851459
    45 4bts:B4 (3.703) BS01 rna ? GO:0003735 ... E6PBR8 23851459
    46 4bts:B5 (3.703) BS01 rna ? GO:0003729 ... E6PBU4 23851459
    47 4bts:B5 (3.703) BS02 ZN ? GO:0003729 ... E6PBU4 23851459
    48 4bts:B6 (3.703) BS01 rna ? GO:0000028 ... E6PBU5 23851459
    49 4bts:B6 (3.703) BS02 ZN ? GO:0000028 ... E6PBU5 23851459
    50 4bts:B7 (3.703) BS01 rna ? GO:0003723 ... E6PBS8 23851459
    51 4bts:B8 (3.703) BS01 rna ? GO:0003735 ... E6PBU3 23851459
    52 4bts:B9 (3.703) BS01 rna ? GO:0003677 ... E6PBU9 23851459
    53 4bts:B9 (3.703) BS02 rna ? GO:0003677 ... E6PBU9 23851459
    54 4bts:B9 (3.703) BS03 ZN ? GO:0003677 ... E6PBU9 23851459
    55 4bts:BB (3.703) BS01 rna ? GO:0000028 ... E6PBR9 23851459
    56 4bts:BC (3.703) BS01 rna ? GO:0003723 ... E6PBS1 23851459
    57 4bts:BD (3.703) BS01 rna ? GO:0003723 ... E6PBS7 23851459
    58 4bts:BD (3.703) BS02 rna ? GO:0003723 ... E6PBS7 23851459
    59 4bts:BE (3.703) BS01 rna ? GO:0003723 ... E6PBS0 23851459
    60 4bts:BF (3.703) BS01 rna ? GO:0003723 ... E6PBV1 23851459
    61 4bts:BG (3.703) BS01 rna ? GO:0000028 ... E6PBS3 23851459
    62 4bts:BH (3.703) BS01 rna ? GO:0003735 ... E6PBU0 23851459
    63 4bts:BI (3.703) BS01 rna ? GO:0000462 ... E6PBT4 23851459
    64 4bts:BJ (3.703) BS01 rna ? GO:0003735 ... E6PBT8 23851459
    65 4bts:BK (3.703) BS01 rna ? GO:0000028 ... E6PBT2 23851459
    66 4bts:BL (3.703) BS01 rna ? GO:0003735 ... P06147 23851459
    67 4bts:BM (3.703) BS01 rna ? GO:0003676 ... E6PBT6 23851459
    68 4bts:BN (3.703) BS01 rna ? GO:0003735 ... E6PBU7 23851459
    69 4bts:BN (3.703) BS02 ZN ? GO:0003735 ... E6PBU7 23851459
    70 4bts:BO (3.703) BS01 rna ? GO:0003735 ... E6PBT1 23851459
    71 4bts:BP (3.703) BS01 rna ? GO:0003735 ... E6PBU2 23851459
    72 4bts:BQ (3.703) BS01 rna ? GO:0003735 ... E6PBS9 23851459
    73 4bts:BR (3.703) BS01 rna ? GO:0001934 ... E6PBV0 23851459
    74 4bts:BS (3.703) BS01 rna ? GO:0000028 ... E6PBT3 23851459
    75 4bts:BT (3.703) BS01 rna ? GO:0000028 ... E6PBT7 23851459
    76 4bts:BU (3.703) BS01 rna ? GO:0003735 ... E6PBT0 23851459
    77 4bts:BV (3.703) BS01 rna ? GO:0003735 ... E6PBT5 23851459
    78 4bts:BW (3.703) BS01 rna ? GO:0003723 ... E6PBS2 23851459
    79 4bts:BX (3.703) BS01 rna ? GO:0003735 ... E6PBU8 23851459
    80 4bts:BY (3.703) BS01 rna ? GO:0003735 ... E6PBS4 23851459
    81 4bts:BZ (3.703) BS01 rna ? GO:0000447 ... E6PBT9 23851459
    82 4bts:C0 (3.703) BS01 rna ? GO:0003723 ... I7MK25 23851459
    83 4bts:C1 (3.703) BS01 rna ? GO:0000028 ... E6PBU6 23851459
    84 4bts:C2 (3.703) BS01 rna ? GO:0000462 ... E6PBS6 23851459
    85 4bts:C3 (3.703) BS01 rna ? GO:0003735 ... E6PBS5 23851459
    86 4bts:C4 (3.703) BS01 rna ? GO:0003735 ... E6PBR8 23851459
    87 4bts:C5 (3.703) BS01 rna ? GO:0003729 ... E6PBU4 23851459
    88 4bts:C5 (3.703) BS02 ZN ? GO:0003729 ... E6PBU4 23851459
    89 4bts:C6 (3.703) BS01 rna ? GO:0000028 ... E6PBU5 23851459
    90 4bts:C6 (3.703) BS02 ZN ? GO:0000028 ... E6PBU5 23851459
    91 4bts:C7 (3.703) BS01 rna ? GO:0003723 ... E6PBS8 23851459
    92 4bts:C8 (3.703) BS01 rna ? GO:0003735 ... E6PBU3 23851459
    93 4bts:C9 (3.703) BS01 rna ? GO:0003677 ... E6PBU9 23851459
    94 4bts:C9 (3.703) BS02 ZN ? GO:0003677 ... E6PBU9 23851459
    95 4bts:CB (3.703) BS01 rna ? GO:0000028 ... E6PBR9 23851459
    96 4bts:CC (3.703) BS01 rna ? GO:0003723 ... E6PBS1 23851459
    97 4bts:CD (3.703) BS01 rna ? GO:0003723 ... E6PBS7 23851459
    98 4bts:CE (3.703) BS01 rna ? GO:0003723 ... E6PBS0 23851459
    99 4bts:CF (3.703) BS01 rna ? GO:0003723 ... E6PBV1 23851459
    100 4bts:CG (3.703) BS01 rna ? GO:0000028 ... E6PBS3 23851459
    101 4bts:CH (3.703) BS01 rna ? GO:0003735 ... E6PBU0 23851459
    102 4bts:CI (3.703) BS01 rna ? GO:0000462 ... E6PBT4 23851459
    103 4bts:CJ (3.703) BS01 rna ? GO:0003735 ... E6PBT8 23851459
    104 4bts:CK (3.703) BS01 rna ? GO:0000028 ... E6PBT2 23851459
    105 4bts:CL (3.703) BS01 rna ? GO:0003735 ... P06147 23851459
    106 4bts:CM (3.703) BS01 rna ? GO:0003676 ... E6PBT6 23851459
    107 4bts:CN (3.703) BS01 rna ? GO:0003735 ... E6PBU7 23851459
    108 4bts:CN (3.703) BS02 ZN ? GO:0003735 ... E6PBU7 23851459
    109 4bts:CO (3.703) BS01 rna ? GO:0003735 ... E6PBT1 23851459
    110 4bts:CP (3.703) BS01 rna ? GO:0003735 ... E6PBU2 23851459
    111 4bts:CQ (3.703) BS01 rna ? GO:0003735 ... E6PBS9 23851459
    112 4bts:CR (3.703) BS01 rna ? GO:0001934 ... E6PBV0 23851459
    113 4bts:CS (3.703) BS01 rna ? GO:0000028 ... E6PBT3 23851459
    114 4bts:CT (3.703) BS01 rna ? GO:0000028 ... E6PBT7 23851459
    115 4bts:CT (3.703) BS02 rna ? GO:0000028 ... E6PBT7 23851459
    116 4bts:CU (3.703) BS01 rna ? GO:0003735 ... E6PBT0 23851459
    117 4bts:CV (3.703) BS01 rna ? GO:0003735 ... E6PBT5 23851459
    118 4bts:CW (3.703) BS01 rna ? GO:0003723 ... E6PBS2 23851459
    119 4bts:CX (3.703) BS01 rna ? GO:0003735 ... E6PBU8 23851459
    120 4bts:CY (3.703) BS01 rna ? GO:0003735 ... E6PBS4 23851459
    121 4bts:CZ (3.703) BS01 rna ? GO:0000447 ... E6PBT9 23851459
    122 4bts:D0 (3.703) BS01 rna ? GO:0003723 ... I7MK25 23851459
    123 4bts:D1 (3.703) BS01 rna ? GO:0000028 ... E6PBU6 23851459
    124 4bts:D2 (3.703) BS01 rna ? GO:0000462 ... E6PBS6 23851459
    125 4bts:D3 (3.703) BS01 rna ? GO:0003735 ... E6PBS5 23851459
    126 4bts:D4 (3.703) BS01 rna ? GO:0003735 ... E6PBR8 23851459
    127 4bts:D5 (3.703) BS01 rna ? GO:0003729 ... E6PBU4 23851459
    128 4bts:D5 (3.703) BS02 ZN ? GO:0003729 ... E6PBU4 23851459
    129 4bts:D6 (3.703) BS01 rna ? GO:0000028 ... E6PBU5 23851459
    130 4bts:D6 (3.703) BS02 ZN ? GO:0000028 ... E6PBU5 23851459
    131 4bts:D7 (3.703) BS01 rna ? GO:0003723 ... E6PBS8 23851459
    132 4bts:D8 (3.703) BS01 rna ? GO:0003735 ... E6PBU3 23851459
    133 4bts:D9 (3.703) BS01 rna ? GO:0003677 ... E6PBU9 23851459
    134 4bts:D9 (3.703) BS02 ZN ? GO:0003677 ... E6PBU9 23851459
    135 4bts:DB (3.703) BS01 rna ? GO:0000028 ... E6PBR9 23851459
    136 4bts:DC (3.703) BS01 rna ? GO:0003723 ... E6PBS1 23851459
    137 4bts:DD (3.703) BS01 rna ? GO:0003723 ... E6PBS7 23851459
    138 4bts:DE (3.703) BS01 rna ? GO:0003723 ... E6PBS0 23851459
    139 4bts:DF (3.703) BS01 rna ? GO:0003723 ... E6PBV1 23851459
    140 4bts:DG (3.703) BS01 rna ? GO:0000028 ... E6PBS3 23851459
    141 4bts:DH (3.703) BS01 rna ? GO:0003735 ... E6PBU0 23851459
    142 4bts:DI (3.703) BS01 rna ? GO:0000462 ... E6PBT4 23851459
    143 4bts:DJ (3.703) BS01 rna ? GO:0003735 ... E6PBT8 23851459
    144 4bts:DK (3.703) BS01 rna ? GO:0000028 ... E6PBT2 23851459
    145 4bts:DL (3.703) BS01 rna ? GO:0003735 ... P06147 23851459
    146 4bts:DM (3.703) BS01 rna ? GO:0003676 ... E6PBT6 23851459
    147 4bts:DN (3.703) BS01 rna ? GO:0003735 ... E6PBU7 23851459
    148 4bts:DN (3.703) BS02 ZN ? GO:0003735 ... E6PBU7 23851459
    149 4bts:DO (3.703) BS01 rna ? GO:0003735 ... E6PBT1 23851459
    150 4bts:DP (3.703) BS01 rna ? GO:0003735 ... E6PBU2 23851459
    151 4bts:DQ (3.703) BS01 rna ? GO:0003735 ... E6PBS9 23851459
    152 4bts:DR (3.703) BS01 rna ? GO:0001934 ... E6PBV0 23851459
    153 4bts:DS (3.703) BS01 rna ? GO:0000028 ... E6PBT3 23851459
    154 4bts:DT (3.703) BS01 rna ? GO:0000028 ... E6PBT7 23851459
    155 4bts:DU (3.703) BS01 rna ? GO:0003735 ... E6PBT0 23851459
    156 4bts:DV (3.703) BS01 rna ? GO:0003735 ... E6PBT5 23851459
    157 4bts:DW (3.703) BS01 rna ? GO:0003723 ... E6PBS2 23851459
    158 4bts:DX (3.703) BS01 rna ? GO:0003735 ... E6PBU8 23851459
    159 4bts:DY (3.703) BS01 rna ? GO:0003735 ... E6PBS4 23851459
    160 4bts:DZ (3.703) BS01 rna ? GO:0000447 ... E6PBT9 23851459
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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