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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3t1h:B (3.11) BS01 rna ? GO:0003735 ... P80371 22227389
    2 3t1h:B (3.11) BS02 MG ? GO:0003735 ... P80371 22227389
    3 3t1h:C (3.11) BS01 rna ? GO:0003676 ... P80372 22227389
    4 3t1h:D (3.11) BS01 rna ? GO:0003723 ... P80373 22227389
    5 3t1h:E (3.11) BS01 rna ? GO:0003723 ... Q5SHQ5 22227389
    6 3t1h:F (3.11) BS01 rna ? GO:0003735 ... Q5SLP8 22227389
    7 3t1h:G (3.11) BS01 rna ? GO:0000028 ... P17291 22227389
    8 3t1h:H (3.11) BS01 rna ? GO:0003735 ... P0DOY9 22227389
    9 3t1h:I (3.11) BS01 rna ? GO:0000049 ... P80374 22227389
    10 3t1h:J (3.11) BS01 rna ? GO:0000049 ... Q5SHN7 22227389
    11 3t1h:K (3.11) BS01 rna ? GO:0003735 ... P80376 22227389
    12 3t1h:L (3.11) BS01 rna ? GO:0000049 ... Q5SHN3 22227389
    13 3t1h:M (3.11) BS01 rna ? GO:0000049 ... P80377 22227389
    14 3t1h:N (3.11) BS01 rna ? GO:0003735 ... P0DOY6 22227389
    15 3t1h:N (3.11) BS02 ZN ? GO:0003735 ... P0DOY6 22227389
    16 3t1h:O (3.11) BS01 rna ? GO:0003735 ... Q5SJ76 22227389
    17 3t1h:P (3.11) BS01 rna ? GO:0003735 ... Q5SJH3 22227389
    18 3t1h:Q (3.11) BS01 rna ? GO:0003735 ... P0DOY7 22227389
    19 3t1h:R (3.11) BS01 rna ? GO:0003735 ... Q5SLQ0 22227389
    20 3t1h:S (3.11) BS01 rna ? GO:0000028 ... Q5SHP2 22227389
    21 3t1h:T (3.11) BS01 rna ? GO:0003723 ... P80380 22227389
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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