Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3qpb:A (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    2 3qpb:A (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    3 3qpb:A (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    4 3qpb:B (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    5 3qpb:B (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    6 3qpb:B (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    7 3qpb:C (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    8 3qpb:C (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    9 3qpb:C (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    10 3qpb:D (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    11 3qpb:D (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    12 3qpb:D (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    13 3qpb:E (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    14 3qpb:E (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    15 3qpb:E (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    16 3qpb:F (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    17 3qpb:F (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    18 3qpb:F (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    19 3qpb:G (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    20 3qpb:G (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    21 3qpb:G (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    22 3qpb:H (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    23 3qpb:H (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    24 3qpb:H (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    25 3qpb:I (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    26 3qpb:I (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    27 3qpb:I (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    28 3qpb:J (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    29 3qpb:J (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    30 3qpb:J (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    31 3qpb:K (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    32 3qpb:K (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    33 3qpb:K (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    34 3qpb:L (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    35 3qpb:L (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    36 3qpb:L (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    37 3qpb:M (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    38 3qpb:M (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    39 3qpb:M (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    40 3qpb:N (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    41 3qpb:N (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    42 3qpb:N (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    43 3qpb:O (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    44 3qpb:O (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    45 3qpb:O (1.82) BS03 R1P N/A GO:0003824 ... N/A 21707079
    46 3qpb:P (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    47 3qpb:P (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    48 3qpb:P (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    49 3qpb:Q (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    50 3qpb:Q (1.82) BS02 URA N/A GO:0003824 ... N/A 21707079
    51 3qpb:R (1.82) BS01 R1P N/A GO:0003824 ... N/A 21707079
    52 3qpb:R (1.82) BS02 R1P N/A GO:0003824 ... N/A 21707079
    53 3qpb:R (1.82) BS03 URA N/A GO:0003824 ... N/A 21707079
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417