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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3kr4:A (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    2 3kr4:A (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    3 3kr4:A (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    4 3kr4:A (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    5 3kr4:B (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    6 3kr4:B (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    7 3kr4:B (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    8 3kr4:B (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    9 3kr4:C (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    10 3kr4:C (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    11 3kr4:C (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    12 3kr4:C (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    13 3kr4:D (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    14 3kr4:D (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    15 3kr4:D (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    16 3kr4:D (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    17 3kr4:E (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    18 3kr4:E (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    19 3kr4:E (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    20 3kr4:E (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    21 3kr4:F (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    22 3kr4:F (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    23 3kr4:F (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    24 3kr4:F (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    25 3kr4:G (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    26 3kr4:G (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    27 3kr4:G (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    28 3kr4:G (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    29 3kr4:H (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    30 3kr4:H (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    31 3kr4:H (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    32 3kr4:H (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    33 3kr4:I (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    34 3kr4:I (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    35 3kr4:I (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    36 3kr4:I (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    37 3kr4:J (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    38 3kr4:J (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    39 3kr4:J (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    40 3kr4:J (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    41 3kr4:K (2.0) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    42 3kr4:K (2.0) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    43 3kr4:K (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    44 3kr4:K (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    45 3kr4:L (2.0) BS01 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    46 3kr4:L (2.0) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    47 3kr4:L (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    48 3kr4:L (2.0) BS04 MG 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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