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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jcd:0 (3.7) BS01 rna ? GO:0000027 ... P0A7N4 26809121
    2 3jcd:1 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 26809121
    3 3jcd:2 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 26809121
    4 3jcd:3 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 26809121
    5 3jcd:4 (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 26809121
    6 3jcd:5 (3.7) BS01 rna ? GO:0000027 ... P0A7L0 26809121
    7 3jcd:C (3.7) BS01 rna ? GO:0000027 ... P60422 26809121
    8 3jcd:D (3.7) BS01 rna ? GO:0000027 ... P60438 26809121
    9 3jcd:E (3.7) BS01 rna ? GO:0001070 ... P60723 26809121
    10 3jcd:F (3.7) BS01 rna ? GO:0000027 ... P62399 26809121
    11 3jcd:F (3.7) BS02 rna ? GO:0000027 ... P62399 26809121
    12 3jcd:F (3.7) BS03 rna ? GO:0000027 ... P62399 26809121
    13 3jcd:G (3.7) BS01 rna ? GO:0000027 ... P0AG55 26809121
    14 3jcd:H (3.7) BS01 rna ? GO:0002181 ... P0A7R1 26809121
    15 3jcd:I (3.7) BS01 rna ? GO:0000027 ... P0A7J7 26809121
    16 3jcd:J (3.7) BS01 rna ? GO:0002181 ... P0AA10 26809121
    17 3jcd:K (3.7) BS01 rna ? GO:0002181 ... P0ADY3 26809121
    18 3jcd:K (3.7) BS02 rna ? GO:0002181 ... P0ADY3 26809121
    19 3jcd:L (3.7) BS01 rna ? GO:0002181 ... P02413 26809121
    20 3jcd:M (3.7) BS01 rna ? GO:0000027 ... P0ADY7 26809121
    21 3jcd:N (3.7) BS01 rna ? GO:0000027 ... P0AG44 26809121
    22 3jcd:O (3.7) BS01 rna ? GO:0002181 ... P0C018 26809121
    23 3jcd:O (3.7) BS02 rna ? GO:0002181 ... P0C018 26809121
    24 3jcd:P (3.7) BS01 rna ? GO:0000027 ... P0A7K6 26809121
    25 3jcd:P (3.7) BS02 rna ? GO:0000027 ... P0A7K6 26809121
    26 3jcd:Q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 26809121
    27 3jcd:R (3.7) BS01 rna ? GO:0002181 ... P0AG48 26809121
    28 3jcd:S (3.7) BS01 rna ? GO:0002181 ... P61175 26809121
    29 3jcd:T (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 26809121
    30 3jcd:U (3.7) BS01 rna ? GO:0000027 ... P60624 26809121
    31 3jcd:V (3.7) BS01 rna ? GO:0000027 ... P68919 26809121
    32 3jcd:V (3.7) BS02 rna ? GO:0000027 ... P68919 26809121
    33 3jcd:W (3.7) BS01 rna ? GO:0000027 ... P0A7L8 26809121
    34 3jcd:W (3.7) BS02 rna ? GO:0000027 ... P0A7L8 26809121
    35 3jcd:X (3.7) BS01 rna ? GO:0000027 ... P0A7M2 26809121
    36 3jcd:X (3.7) BS02 rna ? GO:0000027 ... P0A7M2 26809121
    37 3jcd:Y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 26809121
    38 3jcd:Z (3.7) BS01 rna ? GO:0000027 ... P0AG51 26809121
    39 3jcd:b (3.7) BS01 rna ? GO:0000028 ... P0A7V0 26809121
    40 3jcd:c (3.7) BS01 rna ? GO:0000028 ... P0A7V3 26809121
    41 3jcd:d (3.7) BS01 rna ? GO:0000028 ... P0A7V8 26809121
    42 3jcd:e (3.7) BS01 rna ? GO:0000028 ... P0A7W1 26809121
    43 3jcd:f (3.7) BS01 rna ? GO:0002181 ... P02358 26809121
    44 3jcd:g (3.7) BS01 rna ? GO:0000028 ... P02359 26809121
    45 3jcd:g (3.7) BS02 rna ? GO:0000028 ... P02359 26809121
    46 3jcd:h (3.7) BS01 rna ? GO:0000028 ... P0A7W7 26809121
    47 3jcd:i (3.7) BS01 rna ? GO:0000049 ... P0A7X3 26809121
    48 3jcd:j (3.7) BS01 rna ? GO:0000049 ... P0A7R5 26809121
    49 3jcd:k (3.7) BS01 rna ? GO:0002181 ... P0A7R9 26809121
    50 3jcd:l (3.7) BS01 rna ? GO:0000049 ... P0A7S3 26809121
    51 3jcd:m (3.7) BS01 rna ? GO:0000049 ... P0A7S9 26809121
    52 3jcd:m (3.7) BS02 rna ? GO:0000049 ... P0A7S9 26809121
    53 3jcd:n (3.7) BS01 rna ? GO:0000028 ... P0AG59 26809121
    54 3jcd:o (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 26809121
    55 3jcd:o (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 26809121
    56 3jcd:p (3.7) BS01 rna ? GO:0000028 ... P0A7T3 26809121
    57 3jcd:q (3.7) BS01 rna ? GO:0000028 ... P0AG63 26809121
    58 3jcd:r (3.7) BS01 rna ? GO:0002181 ... P0A7T7 26809121
    59 3jcd:s (3.7) BS01 rna ? GO:0000028 ... P0A7U3 26809121
    60 3jcd:t (3.7) BS01 rna ? GO:0000028 ... P0A7U7 26809121
    61 3jcd:u (3.7) BS01 rna ? GO:0000028 ... P68679 26809121
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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