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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jbb:A (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    2 3jbb:B (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    3 3jbb:B (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    4 3jbb:C (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    5 3jbb:D (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    6 3jbb:D (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    7 3jbb:E (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    8 3jbb:F (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    9 3jbb:F (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    10 3jbb:G (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    11 3jbb:H (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    12 3jbb:H (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    13 3jbb:I (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    14 3jbb:J (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    15 3jbb:J (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    16 3jbb:K (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I959 26514405
    17 3jbb:L (26.0) BS01 CYC ? GO:0009579 ... A0A0R4I960 26514405
    18 3jbb:L (26.0) BS02 CYC ? GO:0009579 ... A0A0R4I960 26514405
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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