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BioLiP
Download all results in tab-seperated text for 116 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j9x:1 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    2 3j9x:1 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    3 3j9x:2 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    4 3j9x:2 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    5 3j9x:3 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    6 3j9x:3 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    7 3j9x:4 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    8 3j9x:4 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    9 3j9x:5 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    10 3j9x:5 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    11 3j9x:6 (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    12 3j9x:6 (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    13 3j9x:A (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    14 3j9x:A (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    15 3j9x:B (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    16 3j9x:B (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    17 3j9x:C (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    18 3j9x:C (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    19 3j9x:D (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    20 3j9x:D (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    21 3j9x:E (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    22 3j9x:E (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    23 3j9x:F (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    24 3j9x:F (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    25 3j9x:G (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    26 3j9x:G (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    27 3j9x:H (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    28 3j9x:H (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    29 3j9x:I (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    30 3j9x:I (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    31 3j9x:J (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    32 3j9x:J (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    33 3j9x:K (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    34 3j9x:K (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    35 3j9x:L (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    36 3j9x:L (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    37 3j9x:M (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    38 3j9x:M (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    39 3j9x:N (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    40 3j9x:N (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    41 3j9x:O (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    42 3j9x:O (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    43 3j9x:P (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    44 3j9x:P (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    45 3j9x:Q (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    46 3j9x:Q (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    47 3j9x:R (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    48 3j9x:R (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    49 3j9x:S (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    50 3j9x:S (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    51 3j9x:T (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    52 3j9x:T (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    53 3j9x:U (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    54 3j9x:U (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    55 3j9x:V (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    56 3j9x:V (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    57 3j9x:W (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    58 3j9x:W (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    59 3j9x:X (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    60 3j9x:X (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    61 3j9x:Y (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    62 3j9x:Y (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    63 3j9x:Z (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    64 3j9x:Z (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    65 3j9x:a (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    66 3j9x:a (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    67 3j9x:b (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    68 3j9x:b (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    69 3j9x:c (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    70 3j9x:c (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    71 3j9x:d (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    72 3j9x:d (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    73 3j9x:e (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    74 3j9x:e (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    75 3j9x:f (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    76 3j9x:f (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    77 3j9x:g (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    78 3j9x:g (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    79 3j9x:h (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    80 3j9x:h (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    81 3j9x:i (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    82 3j9x:i (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    83 3j9x:j (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    84 3j9x:j (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    85 3j9x:k (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    86 3j9x:k (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    87 3j9x:l (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    88 3j9x:l (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    89 3j9x:m (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    90 3j9x:m (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    91 3j9x:n (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    92 3j9x:n (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    93 3j9x:o (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    94 3j9x:o (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    95 3j9x:p (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    96 3j9x:p (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    97 3j9x:q (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    98 3j9x:q (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    99 3j9x:r (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    100 3j9x:r (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    101 3j9x:s (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    102 3j9x:s (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    103 3j9x:t (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    104 3j9x:t (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    105 3j9x:u (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    106 3j9x:u (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    107 3j9x:v (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    108 3j9x:v (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    109 3j9x:w (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    110 3j9x:w (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    111 3j9x:x (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    112 3j9x:x (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    113 3j9x:y (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    114 3j9x:y (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    115 3j9x:z (3.8) BS01 dna ? GO:0003677 ... Q8V9P2 25999507
    116 3j9x:z (3.8) BS02 dna ? GO:0003677 ... Q8V9P2 25999507
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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