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BioLiP Library
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ise:A (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    2 3ise:B (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    3 3ise:C (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    4 3ise:D (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    5 3ise:E (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    6 3ise:F (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    7 3ise:F (2.8) BS02 FE 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    8 3ise:G (2.8) BS01 FE 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    9 3ise:G (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    10 3ise:H (2.8) BS01 FE 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    11 3ise:H (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    12 3ise:I (2.8) BS01 FE 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    13 3ise:I (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    14 3ise:J (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    15 3ise:K (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    16 3ise:L (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    17 3ise:M (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    18 3ise:N (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    19 3ise:O (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    20 3ise:P (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    21 3ise:P (2.8) BS02 FE 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    22 3ise:Q (2.8) BS01 FE 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    23 3ise:Q (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    24 3ise:R (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    25 3ise:S (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    26 3ise:T (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    27 3ise:U (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    28 3ise:V (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    29 3ise:W (2.8) BS01 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    30 3ise:X (2.8) BS01 FE 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    31 3ise:X (2.8) BS02 HEM 1.16.3.1 GO:0004322 ... Q9HY79 20067302
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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