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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 194 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1vy6:AB (2.9) BS01 rna ? GO:0003735 ... P80371 25132179
    2 1vy6:AC (2.9) BS01 rna ? GO:0003676 ... P80372 25132179
    3 1vy6:AD (2.9) BS01 rna ? GO:0003723 ... P80373 25132179
    4 1vy6:AD (2.9) BS02 SF4 ? GO:0003723 ... P80373 25132179
    5 1vy6:AE (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    6 1vy6:AF (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    7 1vy6:AG (2.9) BS01 rna ? GO:0000028 ... P17291 25132179
    8 1vy6:AH (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    9 1vy6:AI (2.9) BS01 rna ? GO:0000049 ... P80374 25132179
    10 1vy6:AI (2.9) BS02 rna ? GO:0000049 ... P80374 25132179
    11 1vy6:AJ (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    12 1vy6:AK (2.9) BS01 rna ? GO:0003735 ... P80376 25132179
    13 1vy6:AK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    14 1vy6:AL (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    15 1vy6:AL (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    16 1vy6:AL (2.9) BS03 MG ? GO:0000049 ... Q5SHN3 25132179
    17 1vy6:AM (2.9) BS01 rna ? GO:0000049 ... P80377 25132179
    18 1vy6:AM (2.9) BS02 rna ? GO:0000049 ... P80377 25132179
    19 1vy6:AM (2.9) BS03 MG ? GO:0000049 ... P80377 25132179
    20 1vy6:AN (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    21 1vy6:AN (2.9) BS02 ZN N/A GO:0003735 ... N/A 25132179
    22 1vy6:AO (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    23 1vy6:AO (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    24 1vy6:AP (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    25 1vy6:AQ (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    26 1vy6:AR (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    27 1vy6:AS (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    28 1vy6:AT (2.9) BS01 rna ? GO:0003723 ... P80380 25132179
    29 1vy6:B0 (2.9) BS01 rna ? GO:0003735 ... P60493 25132179
    30 1vy6:B0 (2.9) BS02 rna ? GO:0003735 ... P60493 25132179
    31 1vy6:B0 (2.9) BS03 rna ? GO:0003735 ... P60493 25132179
    32 1vy6:B0 (2.9) BS04 MG ? GO:0003735 ... P60493 25132179
    33 1vy6:B0 (2.9) BS05 MG ? GO:0003735 ... P60493 25132179
    34 1vy6:B1 (2.9) BS01 rna ? GO:0003735 ... P60494 25132179
    35 1vy6:B2 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    36 1vy6:B3 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    37 1vy6:B3 (2.9) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    38 1vy6:B4 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    39 1vy6:B4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    40 1vy6:B5 (2.9) BS01 rna ? GO:0003735 ... P80339 25132179
    41 1vy6:B5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    42 1vy6:B5 (2.9) BS03 ZN ? GO:0003735 ... P80339 25132179
    43 1vy6:B6 (2.9) BS01 rna ? GO:0000049 ... P35871 25132179
    44 1vy6:B6 (2.9) BS02 MG ? GO:0000049 ... P35871 25132179
    45 1vy6:B6 (2.9) BS03 ZN ? GO:0000049 ... P35871 25132179
    46 1vy6:B7 (2.9) BS01 rna ? GO:0003735 ... P80340 25132179
    47 1vy6:B7 (2.9) BS02 MG ? GO:0003735 ... P80340 25132179
    48 1vy6:B7 (2.9) BS03 MG ? GO:0003735 ... P80340 25132179
    49 1vy6:B8 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    50 1vy6:B9 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    51 1vy6:B9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    52 1vy6:BD (2.9) BS01 rna ? GO:0002181 ... P60405 25132179
    53 1vy6:BD (2.9) BS02 MG ? GO:0002181 ... P60405 25132179
    54 1vy6:BD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    55 1vy6:BD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    56 1vy6:BD (2.9) BS05 MG ? GO:0002181 ... P60405 25132179
    57 1vy6:BD (2.9) BS06 MG ? GO:0002181 ... P60405 25132179
    58 1vy6:BD (2.9) BS07 MG ? GO:0002181 ... P60405 25132179
    59 1vy6:BE (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    60 1vy6:BE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    61 1vy6:BE (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    62 1vy6:BF (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    63 1vy6:BF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    64 1vy6:BF (2.9) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    65 1vy6:BF (2.9) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    66 1vy6:BG (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    67 1vy6:BG (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    68 1vy6:BG (2.9) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    69 1vy6:BG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    70 1vy6:BG (2.9) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    71 1vy6:BH (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    72 1vy6:BI (2.9) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    73 1vy6:BN (2.9) BS01 rna ? GO:0003729 ... P60488 25132179
    74 1vy6:BN (2.9) BS02 MG ? GO:0003729 ... P60488 25132179
    75 1vy6:BO (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    76 1vy6:BO (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    77 1vy6:BP (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    78 1vy6:BP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    79 1vy6:BP (2.9) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    80 1vy6:BQ (2.9) BS01 rna ? GO:0000049 ... P60489 25132179
    81 1vy6:BQ (2.9) BS02 rna ? GO:0000049 ... P60489 25132179
    82 1vy6:BQ (2.9) BS03 MG ? GO:0000049 ... P60489 25132179
    83 1vy6:BQ (2.9) BS04 MG ? GO:0000049 ... P60489 25132179
    84 1vy6:BR (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    85 1vy6:BR (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    86 1vy6:BR (2.9) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    87 1vy6:BS (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    88 1vy6:BS (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    89 1vy6:BT (2.9) BS01 rna ? GO:0003735 ... P60490 25132179
    90 1vy6:BT (2.9) BS02 rna ? GO:0003735 ... P60490 25132179
    91 1vy6:BU (2.9) BS01 rna ? GO:0000027 ... P60491 25132179
    92 1vy6:BU (2.9) BS02 MG ? GO:0000027 ... P60491 25132179
    93 1vy6:BV (2.9) BS01 rna ? GO:0003723 ... P60492 25132179
    94 1vy6:BV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    95 1vy6:BV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    96 1vy6:BV (2.9) BS04 MG ? GO:0003723 ... P60492 25132179
    97 1vy6:BV (2.9) BS05 MG ? GO:0003723 ... P60492 25132179
    98 1vy6:BW (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    99 1vy6:BW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    100 1vy6:BW (2.9) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    101 1vy6:BX (2.9) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    102 1vy6:BY (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    103 1vy6:BY (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    104 1vy6:BZ (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    105 1vy6:BZ (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    106 1vy6:CB (2.9) BS01 rna ? GO:0003735 ... P80371 25132179
    107 1vy6:CC (2.9) BS01 rna ? GO:0003676 ... P80372 25132179
    108 1vy6:CD (2.9) BS01 rna ? GO:0003723 ... P80373 25132179
    109 1vy6:CD (2.9) BS02 SF4 ? GO:0003723 ... P80373 25132179
    110 1vy6:CE (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    111 1vy6:CE (2.9) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    112 1vy6:CE (2.9) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    113 1vy6:CF (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    114 1vy6:CG (2.9) BS01 rna ? GO:0000028 ... P17291 25132179
    115 1vy6:CH (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    116 1vy6:CI (2.9) BS01 rna ? GO:0000049 ... P80374 25132179
    117 1vy6:CI (2.9) BS02 rna ? GO:0000049 ... P80374 25132179
    118 1vy6:CJ (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    119 1vy6:CK (2.9) BS01 rna ? GO:0003735 ... P80376 25132179
    120 1vy6:CK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    121 1vy6:CL (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    122 1vy6:CM (2.9) BS01 rna ? GO:0000049 ... P80377 25132179
    123 1vy6:CM (2.9) BS02 rna ? GO:0000049 ... P80377 25132179
    124 1vy6:CN (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    125 1vy6:CN (2.9) BS02 ZN N/A GO:0003735 ... N/A 25132179
    126 1vy6:CO (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    127 1vy6:CO (2.9) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    128 1vy6:CP (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    129 1vy6:CQ (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    130 1vy6:CR (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    131 1vy6:CS (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    132 1vy6:CT (2.9) BS01 rna ? GO:0003723 ... P80380 25132179
    133 1vy6:CT (2.9) BS02 MG ? GO:0003723 ... P80380 25132179
    134 1vy6:D0 (2.9) BS01 rna ? GO:0003735 ... P60493 25132179
    135 1vy6:D0 (2.9) BS02 rna ? GO:0003735 ... P60493 25132179
    136 1vy6:D0 (2.9) BS03 rna ? GO:0003735 ... P60493 25132179
    137 1vy6:D1 (2.9) BS01 rna ? GO:0003735 ... P60494 25132179
    138 1vy6:D1 (2.9) BS02 MG ? GO:0003735 ... P60494 25132179
    139 1vy6:D2 (2.9) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    140 1vy6:D3 (2.9) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    141 1vy6:D3 (2.9) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    142 1vy6:D3 (2.9) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    143 1vy6:D4 (2.9) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    144 1vy6:D4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    145 1vy6:D5 (2.9) BS01 rna ? GO:0003735 ... P80339 25132179
    146 1vy6:D5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    147 1vy6:D5 (2.9) BS03 ZN ? GO:0003735 ... P80339 25132179
    148 1vy6:D5 (2.9) BS04 MG ? GO:0003735 ... P80339 25132179
    149 1vy6:D6 (2.9) BS01 rna ? GO:0000049 ... P35871 25132179
    150 1vy6:D6 (2.9) BS02 ZN ? GO:0000049 ... P35871 25132179
    151 1vy6:D7 (2.9) BS01 rna ? GO:0003735 ... P80340 25132179
    152 1vy6:D8 (2.9) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    153 1vy6:D9 (2.9) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    154 1vy6:D9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    155 1vy6:DD (2.9) BS01 rna ? GO:0002181 ... P60405 25132179
    156 1vy6:DD (2.9) BS02 rna ? GO:0002181 ... P60405 25132179
    157 1vy6:DD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    158 1vy6:DD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    159 1vy6:DE (2.9) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    160 1vy6:DE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    161 1vy6:DF (2.9) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    162 1vy6:DF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    163 1vy6:DG (2.9) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    164 1vy6:DG (2.9) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    165 1vy6:DG (2.9) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    166 1vy6:DG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    167 1vy6:DH (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    168 1vy6:DI (2.9) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    169 1vy6:DN (2.9) BS01 rna ? GO:0003729 ... P60488 25132179
    170 1vy6:DO (2.9) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    171 1vy6:DO (2.9) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    172 1vy6:DP (2.9) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    173 1vy6:DP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    174 1vy6:DQ (2.9) BS01 rna ? GO:0000049 ... P60489 25132179
    175 1vy6:DQ (2.9) BS02 rna ? GO:0000049 ... P60489 25132179
    176 1vy6:DQ (2.9) BS03 MG ? GO:0000049 ... P60489 25132179
    177 1vy6:DQ (2.9) BS04 MG ? GO:0000049 ... P60489 25132179
    178 1vy6:DQ (2.9) BS05 MG ? GO:0000049 ... P60489 25132179
    179 1vy6:DR (2.9) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    180 1vy6:DS (2.9) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    181 1vy6:DS (2.9) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    182 1vy6:DT (2.9) BS01 rna ? GO:0003735 ... P60490 25132179
    183 1vy6:DT (2.9) BS02 rna ? GO:0003735 ... P60490 25132179
    184 1vy6:DU (2.9) BS01 rna ? GO:0000027 ... P60491 25132179
    185 1vy6:DV (2.9) BS01 rna ? GO:0003723 ... P60492 25132179
    186 1vy6:DV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    187 1vy6:DV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    188 1vy6:DW (2.9) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    189 1vy6:DW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    190 1vy6:DX (2.9) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    191 1vy6:DY (2.9) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    192 1vy6:DY (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    193 1vy6:DZ (2.9) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    194 1vy6:DZ (2.9) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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