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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1n3t:A (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    2 1n3t:A (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    3 1n3t:B (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    4 1n3t:B (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    5 1n3t:C (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    6 1n3t:C (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    7 1n3t:D (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    8 1n3t:D (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    9 1n3t:E (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    10 1n3t:E (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    11 1n3t:F (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    12 1n3t:F (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    13 1n3t:G (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    14 1n3t:G (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    15 1n3t:H (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    16 1n3t:H (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    17 1n3t:I (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    18 1n3t:I (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    19 1n3t:J (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    20 1n3t:J (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    21 1n3t:K (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    22 1n3t:K (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    23 1n3t:L (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    24 1n3t:L (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    25 1n3t:M (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    26 1n3t:M (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    27 1n3t:N (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    28 1n3t:N (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    29 1n3t:O (3.2) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    30 1n3t:O (3.2) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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