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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i96:B (4.2) BS01 rna ? GO:0003735 ... P80371 11296217
    2 1i96:C (4.2) BS01 rna ? GO:0003676 ... P80372 11296217
    3 1i96:D (4.2) BS01 rna ? GO:0003723 ... P80373 11296217
    4 1i96:I (4.2) BS01 rna ? GO:0000049 ... P62669 11296217
    5 1i96:J (4.2) BS01 rna ? GO:0000049 ... Q5SHN7 11296217
    6 1i96:K (4.2) BS01 rna ? GO:0003735 ... P80376 11296217
    7 1i96:K (4.2) BS02 WO2 ? GO:0003735 ... P80376 11296217
    8 1i96:L (4.2) BS01 rna ? GO:0000049 ... Q5SHN3 11296217
    9 1i96:P (4.2) BS01 rna ? GO:0003735 ... Q5SJH3 11296217
    10 1i96:Q (4.2) BS01 rna ? GO:0003735 ... P0DOY7 11296217
    11 1i96:S (4.2) BS01 rna ? GO:0000028 ... Q5SHP2 11296217
    12 1i96:T (4.2) BS01 rna ? GO:0003723 ... P80380 11296217
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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