Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8vsa:L02 (3.7) BS01 rna ? GO:0000027 ... P60422 38500588
    2 8vsa:L02 (3.7) BS02 rna ? GO:0000027 ... P60422 38500588
    3 8vsa:L03 (3.7) BS01 rna ? GO:0000027 ... P60438 38500588
    4 8vsa:L04 (3.7) BS01 rna ? GO:0003735 ... A1AGK6 38500588
    5 8vsa:L05 (3.7) BS01 rna ? GO:0000049 ... A0A140N5A3 38500588
    6 8vsa:L05 (3.7) BS02 rna ? GO:0000049 ... A0A140N5A3 38500588
    7 8vsa:L05 (3.7) BS03 rna ? GO:0000049 ... A0A140N5A3 38500588
    8 8vsa:L06 (3.7) BS01 rna ? GO:0002181 ... C3SR17 38500588
    9 8vsa:L09 (3.7) BS01 rna ? GO:0003735 ... C3SFP2 38500588
    10 8vsa:L1 (3.7) BS01 rna ? GO:0000049 ... B7MIX0 38500588
    11 8vsa:L10 (3.7) BS01 rna ? GO:0002181 ... P0A7J3 38500588
    12 8vsa:L11 (3.7) BS01 rna ? GO:0000027 ... P0A7J7 38500588
    13 8vsa:L13 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    14 8vsa:L14 (3.7) BS01 rna ? GO:0003735 ... S1NW45 38500588
    15 8vsa:L14 (3.7) BS02 rna ? GO:0003735 ... S1NW45 38500588
    16 8vsa:L15 (3.7) BS01 rna ? GO:0003735 ... A0A037Y8L6 38500588
    17 8vsa:L16 (3.7) BS01 rna ? GO:0000027 ... P0ADY7 38500588
    18 8vsa:L16 (3.7) BS02 rna ? GO:0000027 ... P0ADY7 38500588
    19 8vsa:L16 (3.7) BS03 rna ? GO:0000027 ... P0ADY7 38500588
    20 8vsa:L17 (3.7) BS01 rna ? GO:0003735 ... C3SR72 38500588
    21 8vsa:L18 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    22 8vsa:L18 (3.7) BS02 rna N/A GO:0003735 ... N/A 38500588
    23 8vsa:L19 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    24 8vsa:L19 (3.7) BS02 rna N/A GO:0003735 ... N/A 38500588
    25 8vsa:L20 (3.7) BS01 rna ? GO:0000027 ... B7MAS6 38500588
    26 8vsa:L21 (3.7) BS01 rna ? GO:0003723 ... C3SSG2 38500588
    27 8vsa:L22 (3.7) BS01 rna ? GO:0002181 ... P61175 38500588
    28 8vsa:L23 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    29 8vsa:L24 (3.7) BS01 rna N/A GO:0003723 ... N/A 38500588
    30 8vsa:L25 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    31 8vsa:L27 (3.7) BS01 rna ? GO:0000027 ... P0A7L8 38500588
    32 8vsa:L27 (3.7) BS02 rna ? GO:0000027 ... P0A7L8 38500588
    33 8vsa:L28 (3.7) BS01 rna ? GO:0003735 ... A0A1X3JA73 38500588
    34 8vsa:L29 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    35 8vsa:L30 (3.7) BS01 rna ? GO:0003735 ... C3SR32 38500588
    36 8vsa:L30 (3.7) BS02 rna ? GO:0003735 ... C3SR32 38500588
    37 8vsa:L31 (3.7) BS01 rna ? GO:0003735 ... C3SIV2 38500588
    38 8vsa:L32 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    39 8vsa:L33 (3.7) BS01 rna ? GO:0003735 ... C3SME7 38500588
    40 8vsa:L34 (3.7) BS01 rna ? GO:0003735 ... B7MGC4 38500588
    41 8vsa:L35 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 38500588
    42 8vsa:L36 (3.7) BS01 rna ? GO:0003735 ... A0A0E2L017 38500588
    43 8vsa:S02 (3.7) BS01 rna ? GO:0003735 ... C3TPN2 38500588
    44 8vsa:S02 (3.7) BS02 rna ? GO:0003735 ... C3TPN2 38500588
    45 8vsa:S03 (3.7) BS01 rna ? GO:0003676 ... B7MCS9 38500588
    46 8vsa:S03 (3.7) BS02 rna ? GO:0003676 ... B7MCS9 38500588
    47 8vsa:S04 (3.7) BS01 rna ? GO:0000028 ... P0A7V8 38500588
    48 8vsa:S05 (3.7) BS01 rna ? GO:0000028 ... P0A7W1 38500588
    49 8vsa:S05 (3.7) BS02 rna ? GO:0000028 ... P0A7W1 38500588
    50 8vsa:S06 (3.7) BS01 rna ? GO:0002181 ... P02358 38500588
    51 8vsa:S07 (3.7) BS01 rna ? GO:0000028 ... P02359 38500588
    52 8vsa:S08 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    53 8vsa:S09 (3.7) BS01 rna ? GO:0000028 ... C3SRY2 38500588
    54 8vsa:S10 (3.7) BS01 rna N/A GO:0003723 ... N/A 38500588
    55 8vsa:S11 (3.7) BS01 rna ? GO:0003735 ... B7MCR3 38500588
    56 8vsa:S12 (3.7) BS01 rna ? GO:0000049 ... P0A7S3 38500588
    57 8vsa:S13 (3.7) BS01 rna ? GO:0000049 ... A0A7U9IV78 38500588
    58 8vsa:S13 (3.7) BS02 rna ? GO:0000049 ... A0A7U9IV78 38500588
    59 8vsa:S14 (3.7) BS01 rna ? GO:0003735 ... A0A2X1PQW4 38500588
    60 8vsa:S15 (3.7) BS01 rna ? GO:0000028 ... C3SSQ7 38500588
    61 8vsa:S15 (3.7) BS02 rna ? GO:0000028 ... C3SSQ7 38500588
    62 8vsa:S16 (3.7) BS01 rna ? GO:0000028 ... C3SYP2 38500588
    63 8vsa:S17 (3.7) BS01 rna ? GO:0000028 ... C3SQY7 38500588
    64 8vsa:S18 (3.7) BS01 rna ? GO:0003735 ... A0A0E2KXL3 38500588
    65 8vsa:S19 (3.7) BS01 rna N/A GO:0003723 ... N/A 38500588
    66 8vsa:S19 (3.7) BS02 rna N/A GO:0003723 ... N/A 38500588
    67 8vsa:S20 (3.7) BS01 rna ? GO:0000028 ... C3TRH7 38500588
    68 8vsa:S21 (3.7) BS01 rna ? GO:0003735 ... A0A0E2L2J1 38500588
    69 8vsa:SMPB (3.7) BS01 rna ? GO:0003723 ... A0A2X1N680 38500588
    70 8vsa:SMPB (3.7) BS02 rna ? GO:0003723 ... A0A2X1N680 38500588
    71 8vsa:SMPB (3.7) BS03 rna ? GO:0003723 ... A0A2X1N680 38500588
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218