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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pnv:0 (3.06) BS01 rna ? GO:0003735 ... Q9JIK9 35676484
    2 7pnv:3 (3.06) BS01 rna ? GO:0003674 ... Q9DCJ7 35676484
    3 7pnv:4 (3.06) BS01 rna ? GO:0005654 ... Q14C51 35676484
    4 7pnv:B (3.06) BS01 rna ? GO:0003735 ... Q924T2 35676484
    5 7pnv:B (3.06) BS02 MG ? GO:0003735 ... Q924T2 35676484
    6 7pnv:C (3.06) BS01 rna ? GO:0003735 ... Q9CQV5 35676484
    7 7pnv:D (3.06) BS01 rna ? GO:0003723 ... Q99N87 35676484
    8 7pnv:E (3.06) BS01 rna ? GO:0003735 ... P58064 35676484
    9 7pnv:E (3.06) BS02 FES ? GO:0003735 ... P58064 35676484
    10 7pnv:F (3.06) BS01 rna ? GO:0003735 ... Q80X85 35676484
    11 7pnv:G (3.06) BS01 rna ? GO:0003735 ... Q9D7N3 35676484
    12 7pnv:H (3.06) BS01 rna ? GO:0003735 ... Q80ZK0 35676484
    13 7pnv:I (3.06) BS01 rna ? GO:0003735 ... Q9DCA2 35676484
    14 7pnv:J (3.06) BS01 rna ? GO:0003735 ... O35680 35676484
    15 7pnv:K (3.06) BS01 rna ? GO:0003735 ... Q9CR88 35676484
    16 7pnv:L (3.06) BS01 rna ? GO:0003735 ... Q9DC71 35676484
    17 7pnv:M (3.06) BS01 rna ? GO:0003735 ... Q9CPX7 35676484
    18 7pnv:M (3.06) BS02 FES ? GO:0003735 ... Q9CPX7 35676484
    19 7pnv:N (3.06) BS01 rna ? GO:0003735 ... Q9CQE3 35676484
    20 7pnv:O (3.06) BS01 rna ? GO:0003735 ... Q99N84 35676484
    21 7pnv:O (3.06) BS02 ZN ? GO:0003735 ... Q99N84 35676484
    22 7pnv:P (3.06) BS01 rna ? GO:0003735 ... Q8R2L5 35676484
    23 7pnv:P (3.06) BS02 FES ? GO:0003735 ... Q8R2L5 35676484
    24 7pnv:Q (3.06) BS01 rna ? GO:0003735 ... P58059 35676484
    25 7pnv:S (3.06) BS01 rna ? GO:0003735 ... Q8VE22 35676484
    26 7pnv:T (3.06) BS01 rna ? GO:0003735 ... Q9D125 35676484
    27 7pnv:T (3.06) BS02 FES ? GO:0003735 ... Q9D125 35676484
    28 7pnv:U (3.06) BS01 rna ? GO:0005654 ... Q80ZS3 35676484
    29 7pnv:V (3.06) BS01 rna ? GO:0000049 ... Q8BK72 35676484
    30 7pnv:X (3.06) BS01 rna ? GO:0005739 ... Q9ER88 35676484
    31 7pnv:X (3.06) BS02 ATP ? GO:0005739 ... Q9ER88 35676484
    32 7pnv:Z (3.06) BS01 rna ? GO:0003674 ... Q9D2R8 35676484
    33 7pnv:a (3.06) BS01 rna ? GO:0003674 ... Q6P3B9 35676484
    34 7pnv:b (3.06) BS01 rna 2.1.1.- GO:0005739 ... Q9DCL4 35676484
    35 7pnv:b (3.06) BS02 SAH 2.1.1.- GO:0005739 ... Q9DCL4 35676484
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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