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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7bhp:A (3.3) BS01 rna ? GO:0003676 ... Q9UQ80 33479117
    2 7bhp:A (3.3) BS02 rna ? GO:0003676 ... Q9UQ80 33479117
    3 7bhp:LA (3.3) BS01 rna ? GO:0002181 ... P62917 33479117
    4 7bhp:LB (3.3) BS01 rna ? GO:0002181 ... P39023 33479117
    5 7bhp:LC (3.3) BS01 rna ? GO:0002181 ... P36578 33479117
    6 7bhp:LC (3.3) BS02 rna ? GO:0002181 ... P36578 33479117
    7 7bhp:LD (3.3) BS01 rna ? GO:0000027 ... P46777 33479117
    8 7bhp:LD (3.3) BS02 rna ? GO:0000027 ... P46777 33479117
    9 7bhp:LE (3.3) BS01 rna ? GO:0000027 ... Q02878 33479117
    10 7bhp:LF (3.3) BS01 rna ? GO:0000463 ... P18124 33479117
    11 7bhp:LF (3.3) BS02 rna ? GO:0000463 ... P18124 33479117
    12 7bhp:LG (3.3) BS01 rna ? GO:0000470 ... P62424 33479117
    13 7bhp:LG (3.3) BS02 rna ? GO:0000470 ... P62424 33479117
    14 7bhp:LH (3.3) BS01 rna ? GO:0002181 ... P32969 33479117
    15 7bhp:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 33479117
    16 7bhp:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 33479117
    17 7bhp:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 33479117
    18 7bhp:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 33479117
    19 7bhp:LL (3.3) BS01 rna ? GO:0001824 ... P26373 33479117
    20 7bhp:LM (3.3) BS01 rna ? GO:0002181 ... P50914 33479117
    21 7bhp:LN (3.3) BS01 rna ? GO:0002181 ... P61313 33479117
    22 7bhp:LN (3.3) BS02 rna ? GO:0002181 ... P61313 33479117
    23 7bhp:LO (3.3) BS01 rna ? GO:0002181 ... P40429 33479117
    24 7bhp:LP (3.3) BS01 rna ? GO:0002181 ... P18621 33479117
    25 7bhp:LP (3.3) BS02 rna ? GO:0002181 ... P18621 33479117
    26 7bhp:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 33479117
    27 7bhp:LR (3.3) BS01 rna ? GO:0002181 ... P84098 33479117
    28 7bhp:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 33479117
    29 7bhp:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 33479117
    30 7bhp:LT (3.3) BS01 rna ? GO:0002181 ... P46778 33479117
    31 7bhp:LT (3.3) BS02 rna ? GO:0002181 ... P46778 33479117
    32 7bhp:LU (3.3) BS01 rna ? GO:0002181 ... P35268 33479117
    33 7bhp:LW (3.3) BS01 rna ? GO:0000027 ... P83731 33479117
    34 7bhp:LX (3.3) BS01 rna ? GO:0000027 ... P62750 33479117
    35 7bhp:LX (3.3) BS02 rna ? GO:0000027 ... P62750 33479117
    36 7bhp:LY (3.3) BS01 rna ? GO:0002181 ... P61254 33479117
    37 7bhp:LY (3.3) BS02 rna ? GO:0002181 ... P61254 33479117
    38 7bhp:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 33479117
    39 7bhp:La (3.3) BS01 rna ? GO:0002181 ... P46776 33479117
    40 7bhp:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 33479117
    41 7bhp:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 33479117
    42 7bhp:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 33479117
    43 7bhp:Le (3.3) BS01 rna ? GO:0002181 ... P62910 33479117
    44 7bhp:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 33479117
    45 7bhp:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 33479117
    46 7bhp:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 33479117
    47 7bhp:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 33479117
    48 7bhp:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 33479117
    49 7bhp:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 33479117
    50 7bhp:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 33479117
    51 7bhp:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 33479117
    52 7bhp:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 33479117
    53 7bhp:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 33479117
    54 7bhp:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 33479117
    55 7bhp:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 33479117
    56 7bhp:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 33479117
    57 7bhp:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 33479117
    58 7bhp:Lo (3.3) BS02 ZN ? GO:0002181 ... P83881 33479117
    59 7bhp:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 33479117
    60 7bhp:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 33479117
    61 7bhp:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 33479117
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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