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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kqj:A (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    2 6kqj:A (2.54) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    3 6kqj:A (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    4 6kqj:A (2.54) BS04 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    5 6kqj:B (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    6 6kqj:B (2.54) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    7 6kqj:B (2.54) BS03 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    8 6kqj:B (2.54) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    9 6kqj:C (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    10 6kqj:C (2.54) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    11 6kqj:C (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    12 6kqj:D (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    13 6kqj:D (2.54) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    14 6kqj:D (2.54) BS03 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    15 6kqj:D (2.54) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    16 6kqj:E (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    17 6kqj:E (2.54) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    18 6kqj:E (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    19 6kqj:E (2.54) BS04 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    20 6kqj:E (2.54) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    21 6kqj:F (2.54) BS01 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    22 6kqj:F (2.54) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    23 6kqj:F (2.54) BS03 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    24 6kqj:F (2.54) BS04 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    25 6kqj:F (2.54) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    26 6kqj:G (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    27 6kqj:G (2.54) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    28 6kqj:G (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    29 6kqj:H (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    30 6kqj:H (2.54) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    31 6kqj:H (2.54) BS03 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    32 6kqj:H (2.54) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    33 6kqj:I (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    34 6kqj:I (2.54) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    35 6kqj:I (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    36 6kqj:I (2.54) BS04 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    37 6kqj:J (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    38 6kqj:J (2.54) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    39 6kqj:J (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    40 6kqj:K (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    41 6kqj:K (2.54) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    42 6kqj:K (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    43 6kqj:K (2.54) BS04 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    44 6kqj:K (2.54) BS05 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    45 6kqj:L (2.54) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    46 6kqj:L (2.54) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    47 6kqj:L (2.54) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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