BioLiP

Zhang Lab

University of Michigan

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BioLiP

Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

<< < 1 > >>

#	PDB (Resolution Å)	Site #	Ligand	EC number	GO terms	UniProt	PubMed	Binding affinity
1	3rv8:A (2.29)	BS01	RVC	4.2.99.21 5.4.4.2 5.4.99.5	GO:0000162 ...	P9WFX1	22607697	MOAD: Ki=12uM PDBbind: -logKd/Ki=4.92, Ki=12uM
2	3rv8:B (2.29)	BS01	RVC	4.2.99.21 5.4.4.2 5.4.99.5	GO:0000162 ...	P9WFX1	22607697	MOAD: Ki=12uM
3	3rv8:C (2.29)	BS01	RVC	4.2.99.21 5.4.4.2 5.4.99.5	GO:0000162 ...	P9WFX1	22607697	MOAD: Ki=12uM
4	3rv8:C (2.29)	BS02	VCE	4.2.99.21 5.4.4.2 5.4.99.5	GO:0000162 ...	P9WFX1	22607697	MOAD: Ki=12uM
5	3rv8:D (2.29)	BS01	RVC	4.2.99.21 5.4.4.2 5.4.99.5	GO:0000162 ...	P9WFX1	22607697	MOAD: Ki=12uM

Reference:

Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).

Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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