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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1yo8:A (2.6) BS01 CA ? GO:0005509 ... P35442 16186819
    2 1yo8:A (2.6) BS02 CA ? GO:0005509 ... P35442 16186819
    3 1yo8:A (2.6) BS03 CA ? GO:0005509 ... P35442 16186819
    4 1yo8:A (2.6) BS04 CA ? GO:0005509 ... P35442 16186819
    5 1yo8:A (2.6) BS05 CA ? GO:0005509 ... P35442 16186819
    6 1yo8:A (2.6) BS06 CA ? GO:0005509 ... P35442 16186819
    7 1yo8:A (2.6) BS07 CA ? GO:0005509 ... P35442 16186819
    8 1yo8:A (2.6) BS08 CA ? GO:0005509 ... P35442 16186819
    9 1yo8:A (2.6) BS09 CA ? GO:0005509 ... P35442 16186819
    10 1yo8:A (2.6) BS10 CA ? GO:0005509 ... P35442 16186819
    11 1yo8:A (2.6) BS11 CA ? GO:0005509 ... P35442 16186819
    12 1yo8:A (2.6) BS12 CA ? GO:0005509 ... P35442 16186819
    13 1yo8:A (2.6) BS13 CA ? GO:0005509 ... P35442 16186819
    14 1yo8:A (2.6) BS14 CA ? GO:0005509 ... P35442 16186819
    15 1yo8:A (2.6) BS15 CA ? GO:0005509 ... P35442 16186819
    16 1yo8:A (2.6) BS16 CA ? GO:0005509 ... P35442 16186819
    17 1yo8:A (2.6) BS17 CA ? GO:0005509 ... P35442 16186819
    18 1yo8:A (2.6) BS18 CA ? GO:0005509 ... P35442 16186819
    19 1yo8:A (2.6) BS19 CA ? GO:0005509 ... P35442 16186819
    20 1yo8:A (2.6) BS20 CA ? GO:0005509 ... P35442 16186819
    21 1yo8:A (2.6) BS21 CA ? GO:0005509 ... P35442 16186819
    22 1yo8:A (2.6) BS22 CA ? GO:0005509 ... P35442 16186819
    23 1yo8:A (2.6) BS23 CA ? GO:0005509 ... P35442 16186819
    24 1yo8:A (2.6) BS24 CA ? GO:0005509 ... P35442 16186819
    25 1yo8:A (2.6) BS25 CA ? GO:0005509 ... P35442 16186819
    26 1yo8:A (2.6) BS26 CA ? GO:0005509 ... P35442 16186819
    27 1yo8:A (2.6) BS27 CA ? GO:0005509 ... P35442 16186819
    28 1yo8:A (2.6) BS28 CA ? GO:0005509 ... P35442 16186819
    29 1yo8:A (2.6) BS29 CA ? GO:0005509 ... P35442 16186819
    30 1yo8:A (2.6) BS30 CA ? GO:0005509 ... P35442 16186819

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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