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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1hl5:A (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    2 1hl5:A (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    3 1hl5:B (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    4 1hl5:B (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    5 1hl5:C (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    6 1hl5:C (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    7 1hl5:C (1.8) BS03 CA 1.15.1.1 GO:0000302 ... P00441 12729761
    8 1hl5:D (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    9 1hl5:D (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    10 1hl5:D (1.8) BS03 CA 1.15.1.1 GO:0000302 ... P00441 12729761
    11 1hl5:E (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    12 1hl5:E (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    13 1hl5:F (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    14 1hl5:F (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    15 1hl5:G (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    16 1hl5:G (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    17 1hl5:H (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    18 1hl5:H (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    19 1hl5:H (1.8) BS03 CA 1.15.1.1 GO:0000302 ... P00441 12729761
    20 1hl5:I (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    21 1hl5:I (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    22 1hl5:J (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    23 1hl5:J (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    24 1hl5:K (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    25 1hl5:K (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    26 1hl5:L (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    27 1hl5:L (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    28 1hl5:M (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    29 1hl5:M (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    30 1hl5:N (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    31 1hl5:N (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    32 1hl5:O (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    33 1hl5:O (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    34 1hl5:P (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    35 1hl5:P (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    36 1hl5:Q (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    37 1hl5:Q (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    38 1hl5:S (1.8) BS01 CU 1.15.1.1 GO:0000302 ... P00441 12729761
    39 1hl5:S (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12729761
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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